View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11951_high_6 (Length: 275)
Name: NF11951_high_6
Description: NF11951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11951_high_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 34344179 - 34344452
Alignment:
| Q |
1 |
ttgttagaacaacaaccggtatagaagtataagagaaaacgaaaattggaagataatgaaacacgacttttgttcacgcaattcagccaatggacctaac |
100 |
Q |
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| T |
34344179 |
ttgttagaacaacaaccggtatagaagtataagagaaaacgaaaattggaagataatgaaacacgacttttgttcactcaattcagccaattgaccta-c |
34344277 |
T |
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| Q |
101 |
ctctgtgactatagagcatcgatagttacatttatttctgtgatgaattagggtttacagcgttacaaccaatatatacaatacttcggttcagtttaca |
200 |
Q |
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| T |
34344278 |
ctctgtgactatagagcaccgatagttacatttatttctgtgatgaattagggtttacagcgttacaaccaatatatacaatacttcggttcagtttaca |
34344377 |
T |
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| Q |
201 |
ataattctcctcggcaactttagaatggttatagttcggtttatttcttaacgttccactagcttatctccttct |
275 |
Q |
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| T |
34344378 |
ataatgctcctcggcaactttagaatggttatagttcggtttatttcttaacgttccactagcttagctccttct |
34344452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 23849960 - 23849784
Alignment:
| Q |
1 |
ttgttagaacaacaaccggtatagaagtataagagaaaacgaaaattggaagataatgaaacacgacttttgttcacgcaattcagccaatgg-acctaa |
99 |
Q |
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| T |
23849960 |
ttgttagaacaacaaccggtatagaaatataaaag-gaacgaaaatcgaaagacaatgagacatgatctttgttcacgcagttcggccaatggtgcctac |
23849862 |
T |
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| Q |
100 |
cctctgtgactatagagcatcgatagttacatttatttctgtgatgaattagggtttacagcgttacaaccaatatata |
178 |
Q |
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| T |
23849861 |
cct-tacgactataaagcagtcatagttttgtttatttctgttatgaatcagggtttacattgttacaaccaagatata |
23849784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 673917 - 673843
Alignment:
| Q |
131 |
tttatttctgtgatgaattagggtttacagcgttacaaccaatatatacaatacttcggttcagtttacaataat |
205 |
Q |
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| T |
673917 |
tttatttctgtgatgaattagaatttacagtgttataaccaatatatatagtattacgattcagtttacaataat |
673843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 6938577 - 6938514
Alignment:
| Q |
1 |
ttgttagaacaacaaccggtatagaagtataagagaaaacgaaaattggaagataatgaaacac |
64 |
Q |
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| T |
6938577 |
ttgttagaacaacaaccgatatacaagtataagaaaaaacaaaaattgaaagacaatgagacac |
6938514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 6938467 - 6938389
Alignment:
| Q |
122 |
atagttacatttatttctgtgatgaattagggtttacagcgttacaaccaatatatacaatacttcggttcagtttaca |
200 |
Q |
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| T |
6938467 |
atagttccatttatttttgtcataaattagggtttacaatgttataacaaatatatatagtactttggttcagtttaca |
6938389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 35931872 - 35931832
Alignment:
| Q |
162 |
gttacaaccaatatatacaatacttcggttcagtttacaat |
202 |
Q |
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| T |
35931872 |
gttacaaccaatatatataatactacggttcagtttacaat |
35931832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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