View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11951_low_10 (Length: 251)

Name: NF11951_low_10
Description: NF11951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11951_low_10
NF11951_low_10
[»] chr2 (6 HSPs)
chr2 (113-251)||(11108787-11108925)
chr2 (26-80)||(11108959-11109013)
chr2 (217-251)||(7900259-7900293)
chr2 (211-251)||(3963405-3963445)
chr2 (218-251)||(18906924-18906957)
chr2 (218-251)||(39060406-39060439)
[»] chr1 (4 HSPs)
chr1 (208-251)||(14556393-14556436)
chr1 (211-251)||(36302808-36302848)
chr1 (208-251)||(2937157-2937200)
chr1 (215-251)||(29721466-29721502)
[»] chr6 (2 HSPs)
chr6 (215-251)||(17204242-17204278)
chr6 (214-251)||(6390293-6390330)
[»] chr3 (2 HSPs)
chr3 (215-251)||(19987832-19987868)
chr3 (209-251)||(33092025-33092067)
[»] scaffold0015 (1 HSPs)
scaffold0015 (216-251)||(50096-50131)
[»] chr4 (4 HSPs)
chr4 (216-251)||(10616580-10616615)
chr4 (216-251)||(32384284-32384319)
chr4 (213-249)||(5340195-5340231)
chr4 (219-251)||(5814155-5814187)
[»] chr7 (2 HSPs)
chr7 (217-251)||(21276644-21276678)
chr7 (217-251)||(44141408-44141442)
[»] chr5 (2 HSPs)
chr5 (217-251)||(974206-974240)
chr5 (210-251)||(4717193-4717234)
[»] chr8 (1 HSPs)
chr8 (218-251)||(9855687-9855720)


Alignment Details
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 113 - 251
Target Start/End: Complemental strand, 11108925 - 11108787
Alignment:
Q  113 taagggcagtaaaattaaacaaccgagagaaattagtaaggtatccctcacaaggtcaattcctcttagaaattggttgatccccatatgcttagaaaaa 212  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11108925 taagggcagtaaaattaaacaaccgggagaaattagtaaggtatccctcacaaggtcaattcctcttagaaattagttgatccccatatgcttagaaaaa 11108826  T
Q  213 ataaaggcttaaatatatctttagtccctgcactttcat 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11108825 ataaaggcttaaatatatctttagtccctgcactttcat 11108787  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 11109013 - 11108959
Alignment:
Q  26 gttggtatatatagtgtatataccaattgcatagaggaaaaatcatcttgaacat 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11109013 gttggtatatatagtgtatataccaattgcatagaggaaaaatcatcttgaacat 11108959  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 7900259 - 7900293
Alignment:
Q  217 aggcttaaatatatctttagtccctgcactttcat 251  Q
    |||||||||||||||||||||||||||||||||||    
T  7900259 aggcttaaatatatctttagtccctgcactttcat 7900293  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 3963445 - 3963405
Alignment:
Q  211 aaataaaggcttaaatatatctttagtccctgcactttcat 251  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  3963445 aaattaaggcttaaatatgtctttagtccctgcactttcat 3963405  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 18906924 - 18906957
Alignment:
Q  218 ggcttaaatatatctttagtccctgcactttcat 251  Q
    ||||||||||| ||||||||||||||||||||||    
T  18906924 ggcttaaatatgtctttagtccctgcactttcat 18906957  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 39060406 - 39060439
Alignment:
Q  218 ggcttaaatatatctttagtccctgcactttcat 251  Q
    ||||||||||| ||||||||||||||||||||||    
T  39060406 ggcttaaatatgtctttagtccctgcactttcat 39060439  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 14556436 - 14556393
Alignment:
Q  208 aaaaaataaaggcttaaatatatctttagtccctgcactttcat 251  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  14556436 aaaaaatataggcttaaatatatctttagtccctgcactttcat 14556393  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 36302848 - 36302808
Alignment:
Q  211 aaataaaggcttaaatatatctttagtccctgcactttcat 251  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  36302848 aaataaaggcttaaatatgcctttagtccctgcactttcat 36302808  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 2937200 - 2937157
Alignment:
Q  208 aaaaaataaaggcttaaatatatctttagtccctgcactttcat 251  Q
    |||||||||||| |||||||| |||||||||| |||||||||||    
T  2937200 aaaaaataaaggtttaaatatgtctttagtccttgcactttcat 2937157  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 29721502 - 29721466
Alignment:
Q  215 aaaggcttaaatatatctttagtccctgcactttcat 251  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  29721502 aaaggcttaaatatgtctctagtccctgcactttcat 29721466  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 17204278 - 17204242
Alignment:
Q  215 aaaggcttaaatatatctttagtccctgcactttcat 251  Q
    |||||||||||||||||||||||||||||||||||||    
T  17204278 aaaggcttaaatatatctttagtccctgcactttcat 17204242  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 6390330 - 6390293
Alignment:
Q  214 taaaggcttaaatatatctttagtccctgcactttcat 251  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  6390330 taaaggcttaaatatgtctttagtccctgcactttcat 6390293  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 19987832 - 19987868
Alignment:
Q  215 aaaggcttaaatatatctttagtccctgcactttcat 251  Q
    |||||||||||||| ||||||||||||||||||||||    
T  19987832 aaaggcttaaatatgtctttagtccctgcactttcat 19987868  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 33092025 - 33092067
Alignment:
Q  209 aaaaataaaggcttaaatatatctttagtccctgcactttcat 251  Q
    ||||||||||| |||||||| |||||||||| |||||||||||    
T  33092025 aaaaataaaggtttaaatatgtctttagtccttgcactttcat 33092067  T

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Target: scaffold0015 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 50131 - 50096
Alignment:
Q  216 aaggcttaaatatatctttagtccctgcactttcat 251  Q
    ||||||||||||| ||||||||||||||||||||||    
T  50131 aaggcttaaatatgtctttagtccctgcactttcat 50096  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 10616615 - 10616580
Alignment:
Q  216 aaggcttaaatatatctttagtccctgcactttcat 251  Q
    ||||||||||||| ||||||||||||||||||||||    
T  10616615 aaggcttaaatatgtctttagtccctgcactttcat 10616580  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 32384319 - 32384284
Alignment:
Q  216 aaggcttaaatatatctttagtccctgcactttcat 251  Q
    ||||||||||||| ||||||||||||||||||||||    
T  32384319 aaggcttaaatatgtctttagtccctgcactttcat 32384284  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 5340231 - 5340195
Alignment:
Q  213 ataaaggcttaaatatatctttagtccctgcactttc 249  Q
    |||||||||||||||| | ||||||||||||||||||    
T  5340231 ataaaggcttaaatatgtgtttagtccctgcactttc 5340195  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 5814187 - 5814155
Alignment:
Q  219 gcttaaatatatctttagtccctgcactttcat 251  Q
    |||||||||| ||||||||||||||||||||||    
T  5814187 gcttaaatatgtctttagtccctgcactttcat 5814155  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 21276678 - 21276644
Alignment:
Q  217 aggcttaaatatatctttagtccctgcactttcat 251  Q
    |||||||||||| ||||||||||||||||||||||    
T  21276678 aggcttaaatatgtctttagtccctgcactttcat 21276644  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 44141408 - 44141442
Alignment:
Q  217 aggcttaaatatatctttagtccctgcactttcat 251  Q
    |||||||||||| ||||||||||||||||||||||    
T  44141408 aggcttaaatatgtctttagtccctgcactttcat 44141442  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 974240 - 974206
Alignment:
Q  217 aggcttaaatatatctttagtccctgcactttcat 251  Q
    |||||||||||| ||||||||||||||||||||||    
T  974240 aggcttaaatatgtctttagtccctgcactttcat 974206  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 4717234 - 4717193
Alignment:
Q  210 aaaataaaggcttaaatatatctttagtccctgcactttcat 251  Q
    |||| ||||||||||||||  |||||||||||||||||||||    
T  4717234 aaaaaaaaggcttaaatatgcctttagtccctgcactttcat 4717193  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 218 - 251
Target Start/End: Complemental strand, 9855720 - 9855687
Alignment:
Q  218 ggcttaaatatatctttagtccctgcactttcat 251  Q
    ||||||||||| ||||||||||||||||||||||    
T  9855720 ggcttaaatatgtctttagtccctgcactttcat 9855687  T

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