View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11951_low_11 (Length: 250)
Name: NF11951_low_11
Description: NF11951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11951_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 46470855 - 46470760
Alignment:
| Q |
142 |
cagacgtgaaagaaaatggaagaaactttgcaattagaagcgagttgcagggtcctaatccagttgttgctgctgctgctaaactacccttagttc |
237 |
Q |
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| T |
46470855 |
cagacgtgaaagaaaatggaagaaactttgcaattagaagcgagttgcagggtcctaatccagttgttgctgctgctgctaaactacccttagttc |
46470760 |
T |
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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 46470996 - 46470935
Alignment:
| Q |
1 |
ctacctcggaggaacctccttaataaccattttggtatgttgtaatgttgatctggaatacg |
62 |
Q |
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| T |
46470996 |
ctacctcggaggaacctcctcaataaccattttggtatgttgtaatgttgatctggaatacg |
46470935 |
T |
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