View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11951_low_12 (Length: 239)

Name: NF11951_low_12
Description: NF11951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11951_low_12
NF11951_low_12
[»] chr3 (9 HSPs)
chr3 (1-239)||(39558956-39559194)
chr3 (28-238)||(50814322-50814529)
chr3 (28-238)||(50861335-50861542)
chr3 (27-237)||(39558718-39558928)
chr3 (69-212)||(50814636-50814776)
chr3 (69-212)||(50861088-50861228)
chr3 (27-111)||(49868709-49868793)
chr3 (113-212)||(49857492-49857591)
chr3 (113-232)||(49760622-49760738)
[»] chr4 (1 HSPs)
chr4 (80-136)||(31210971-31211027)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-128; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 39558956 - 39559194
Alignment:
Q  1 agcaaaggatttaatcattacgacacgaggagttgaaaacctaagcatcgatctctgccataaatccaaaaccacattgccttctttagttctaactaac 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39558956 agcaaaggatttaatcattacaacacgaggagttgaaaacctaagcatcgatctctgccataaatccaaaaccacattgccttctttagttctaactaac 39559055  T
Q  101 aaaaccttgaccgtcctcaaattgaagagggtaacattgaacgaagaagttcctttcgtcgatcttccctcgctaaaagtgcttcacttaaaatctgtca 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39559056 aaaaccttgaccgtcctcaaattgaagagggtaacattgaatgaagaagttcctttcgtcgatcttccctcgctaaaagtgcttcacttaaaatctgtca 39559155  T
Q  201 gttacacatattctgactatatcttgaaacttctatctg 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39559156 gttacacatattctgactatatcttgaaacttctatctg 39559194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 238
Target Start/End: Original strand, 50814322 - 50814529
Alignment:
Q  28 aggagttgaaaacctaagcatcgatctctgccataaatccaaaaccacattgccttctttagttctaactaacaaaaccttgaccgtcctcaaattgaag 127  Q
    |||||||||||||||||||||  |||||||||||     | |||||||| ||||||||||  ||||||||| ||||||||||||   |||||||||||||    
T  50814322 aggagttgaaaacctaagcataaatctctgccatcttaacgaaaccacactgccttctttcattctaactagcaaaaccttgacatccctcaaattgaag 50814421  T
Q  128 agggtaacattgaacgaagaagttcctttcgtcgatcttccctcgctaaaagtgcttcacttaaaatctgtcagttacacatattctgactatatcttga 227  Q
    |||||||||||||||   |||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||| || ||||| | |||| ||  |  |||    
T  50814422 agggtaacattgaac---gaagttcctttcgttgatcttccctcactaaaagtccttcacttagaatctgtcactttcacatgtcctgagtacttgatga 50814518  T
Q  228 aacttctatct 238  Q
    |||||||||||    
T  50814519 aacttctatct 50814529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 238
Target Start/End: Complemental strand, 50861542 - 50861335
Alignment:
Q  28 aggagttgaaaacctaagcatcgatctctgccataaatccaaaaccacattgccttctttagttctaactaacaaaaccttgaccgtcctcaaattgaag 127  Q
    |||||||||||||||||||||  |||||||||||     | |||||||| ||||||||||  ||||||||| ||||||||||||   |||||||||||||    
T  50861542 aggagttgaaaacctaagcataaatctctgccatcttaacgaaaccacactgccttctttcattctaactagcaaaaccttgacatccctcaaattgaag 50861443  T
Q  128 agggtaacattgaacgaagaagttcctttcgtcgatcttccctcgctaaaagtgcttcacttaaaatctgtcagttacacatattctgactatatcttga 227  Q
    |||||||||||||||   |||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||| || ||||| | |||| ||  |  |||    
T  50861442 agggtaacattgaac---gaagttcctttcgttgatcttccctcactaaaagtccttcacttagaatctgtcactttcacatgtcctgagtacttgatga 50861346  T
Q  228 aacttctatct 238  Q
    |||||||||||    
T  50861345 aacttctatct 50861335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 39558718 - 39558928
Alignment:
Q  27 gaggagttgaaaacctaagcatcgatctctgcca---taaatccaaaaccacattgccttctttagttctaactaacaaaaccttgaccgtcctcaaatt 123  Q
    ||||||||||||||||||||||| |||||||| |   ||| ||| | | || | ||||| |||| |||||||||| |||||||||||| |||||||||||    
T  39558718 gaggagttgaaaacctaagcatcaatctctgcaagtataactccgatatcatactgcctgctttggttctaactaccaaaaccttgacagtcctcaaatt 39558817  T
Q  124 gaagagggtaacattgaacgaagaagttcctttcgtcgatcttccctcgctaaaagtgcttcacttaaaatctgtcagttacacatattctgactatatc 223  Q
    |||||| ||||||||||||   ||||||||||||||  ||||||||| ||||||||| ||||||||| |||||||| ||| | || ||| ||| || |||    
T  39558818 gaagagtgtaacattgaac---gaagttcctttcgttaatcttcccttgctaaaagtccttcacttagaatctgtcggtttcccacattatgagtacatc 39558914  T
Q  224 ttgaaacttctatc 237  Q
     |||||||||||||    
T  39558915 atgaaacttctatc 39558928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 69 - 212
Target Start/End: Original strand, 50814636 - 50814776
Alignment:
Q  69 aaaccacattgccttctttagttctaactaacaaaaccttgaccgtcctcaaattgaagagggtaacattgaacgaagaagttcctttcgtcgatcttcc 168  Q
    |||||| | ||||||||||  | ||||||| ||||||| |||||   ||||||||||||||| ||||||||||| |||   |||||||||| ||||||||    
T  50814636 aaaccatactgccttctttcatcctaactaccaaaaccctgacccaactcaaattgaagaggataacattgaaccaag---ttcctttcgttgatcttcc 50814732  T
Q  169 ctcgctaaaagtgcttcacttaaaatctgtcagttacacatatt 212  Q
    || ||||||||| ||||||||| |||||||||||| ||||||||    
T  50814733 cttgctaaaagtccttcacttagaatctgtcagtttcacatatt 50814776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 50861228 - 50861088
Alignment:
Q  69 aaaccacattgccttctttagttctaactaacaaaaccttgaccgtcctcaaattgaagagggtaacattgaacgaagaagttcctttcgtcgatcttcc 168  Q
    |||||| | ||||||||||  | ||||||| ||||||| |||||   ||||||||||||||| ||||||||||| |||   |||||||||| ||||||||    
T  50861228 aaaccatactgccttctttcatcctaactaccaaaaccctgacccaactcaaattgaagaggataacattgaaccaag---ttcctttcgttgatcttcc 50861132  T
Q  169 ctcgctaaaagtgcttcacttaaaatctgtcagttacacatatt 212  Q
    || ||||||||| ||||||||| |||||||||||| ||||||||    
T  50861131 cttgctaaaagtccttcacttagaatctgtcagtttcacatatt 50861088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 49868793 - 49868709
Alignment:
Q  27 gaggagttgaaaacctaagcatcgatctctgccataaatccaaaaccacattgccttctttagttctaactaacaaaaccttgac 111  Q
    |||||||| ||||||||| |||||||||||||| | | |||||||| ||||||||| |||| ||||| |||| ||||||||||||    
T  49868793 gaggagttaaaaacctaaccatcgatctctgcctttactccaaaactacattgcctactttcgttcttactaccaaaaccttgac 49868709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 212
Target Start/End: Complemental strand, 49857591 - 49857492
Alignment:
Q  113 gtcctcaaattgaagagggtaacattgaacgaagaagttcctttcgtcgatcttccctcgctaaaagtgcttcacttaaaatctgtcagttacacatatt 212  Q
    |||||||||||||||||| ||||||||||| | |||| |||||| || |||||||| ||||| ||| | ||||||||  |||| ||| ||| ||||||||    
T  49857591 gtcctcaaattgaagaggataacattgaactatgaaggtcctttggttgatcttccgtcgctcaaaatccttcacttggaatccgtctgtttcacatatt 49857492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 232
Target Start/End: Complemental strand, 49760738 - 49760622
Alignment:
Q  113 gtcctcaaattgaagagggtaacattgaacgaagaagttcctttcgtcgatcttccctcgctaaaagtgcttcacttaaaatctgtcagttacacatatt 212  Q
    |||||||||||||||||| |||||||||  | ||   |||| | ||| |||||||| ||||| ||||  ||||||||  ||  ||||| |||||||||||    
T  49760738 gtcctcaaattgaagaggataacattgactggag---ttccgtacgttgatcttccttcgctcaaagcccttcacttggaacttgtcacttacacatatt 49760642  T
Q  213 ctgactatatcttgaaactt 232  Q
     ||| |||||||||||||||    
T  49760641 atgaatatatcttgaaactt 49760622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 31210971 - 31211027
Alignment:
Q  80 ccttctttagttctaactaacaaaaccttgaccgtcctcaaattgaagagggtaaca 136  Q
    |||||||| ||||||| || ||||||||||||  |||||||||||||||| ||||||    
T  31210971 ccttctttggttctaaataccaaaaccttgacattcctcaaattgaagagcgtaaca 31211027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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