View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11951_low_2 (Length: 542)

Name: NF11951_low_2
Description: NF11951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11951_low_2
NF11951_low_2
[»] chr1 (5 HSPs)
chr1 (235-541)||(50361160-50361464)
chr1 (14-238)||(50352586-50352810)
chr1 (356-407)||(46567819-46567870)
chr1 (426-476)||(12605270-12605320)
chr1 (497-542)||(12605201-12605246)
[»] chr5 (1 HSPs)
chr5 (353-407)||(43468375-43468429)
[»] chr7 (1 HSPs)
chr7 (353-407)||(10644881-10644935)
[»] chr4 (1 HSPs)
chr4 (353-407)||(23536989-23537043)
[»] chr3 (2 HSPs)
chr3 (421-476)||(30998147-30998202)
chr3 (497-542)||(30998077-30998122)
[»] chr2 (2 HSPs)
chr2 (421-476)||(10451585-10451640)
chr2 (497-542)||(10451663-10451708)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 235 - 541
Target Start/End: Original strand, 50361160 - 50361464
Alignment:
Q  235 ccacaattaattatgcagactatttatcattacattttttgtcagattactcattgagtagtagtagtagctaaaacatgtgaaaatgcatacctgctgc 334  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  50361160 ccacaattaattatgcagactatttatcattaccttttttgtcagattactcattgagta---gtagtagctaaaacatgtgaaaatgcatacctgctgc 50361256  T
Q  335 ggctcatattaaggctataataggggtttcccattcatattgatcaccatttctagcaggcctcttttactctctttcttcaatcagtttttgtgaattg 434  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50361257 ggctcatattaaggctataataggggtttcccattcatattgatcaccatttatagcaggcctcttttactctctttcttcaatcagtttttgtgaattg 50361356  T
Q  435 ttcctgagcttatcaactttaatctatatgcatttctttagatgnnnnnnnnnnnnnnnnncgac-tttaacttttgcatatcttaatagctctataaag 533  Q
    ||||||||||||||||||||||||||||||||||||||||||||                 |||| ||||||||||||||||||||| ||||||||||||    
T  50361357 ttcctgagcttatcaactttaatctatatgcatttctttagatgtttttttattttattttcgacttttaacttttgcatatcttaacagctctataaag 50361456  T
Q  534 aactacta 541  Q
    ||||||||    
T  50361457 aactacta 50361464  T

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Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 50352586 - 50352810
Alignment:
Q  14 tggacatcattgcaaaaacagattggttgaaacgatctaagttctaacctctaaatnnnnnnnggtttgatggtttcccataatccacctctttccacac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||| |||    
T  50352586 tggacatcattgcaaaaacagattggttgaaacgatctaagttctaacctctaaataaaaaaaggtttgatggtttcccataatccacctctttccgcac 50352685  T
Q  114 ctcatttgcggcattacacatgaaaaacatgtgcttctctttctcccccaaggaaatacttttgcgacaatcttacgcgagtaaggcaacactccacaga 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50352686 ctcatttgcggcattacacatgaaaaacatgtgcttctctttctcctccaaggaaatacttttgcgacaatcttacgcgagtaaggcaacactccacaga 50352785  T
Q  214 gatactttttagaactgagttccac 238  Q
    |||||||||||||||||||||||||    
T  50352786 gatactttttagaactgagttccac 50352810  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 356 - 407
Target Start/End: Original strand, 46567819 - 46567870
Alignment:
Q  356 aggggtttcccattcatattgatcaccatttctagcaggcctcttttactct 407  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  46567819 aggggtttcccattcatattgatcaccatttatagcagacctcttttactct 46567870  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 426 - 476
Target Start/End: Complemental strand, 12605320 - 12605270
Alignment:
Q  426 tgtgaattgttcctgagcttatcaactttaatctatatgcatttctttaga 476  Q
    |||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  12605320 tgtgaattcttcctgagcttatcaactttaattcatatgcatttctttaga 12605270  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 542
Target Start/End: Complemental strand, 12605246 - 12605201
Alignment:
Q  497 gactttaacttttgcatatcttaatagctctataaagaactactat 542  Q
    |||||||| ||||||||| |||||  ||||||||||||||||||||    
T  12605246 gactttaatttttgcataacttaactgctctataaagaactactat 12605201  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 407
Target Start/End: Complemental strand, 43468429 - 43468375
Alignment:
Q  353 aataggggtttcccattcatattgatcaccatttctagcaggcctcttttactct 407  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  43468429 aataggggtttcccattcatattgatcaccatttatagcagacctcttttactct 43468375  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 407
Target Start/End: Complemental strand, 10644935 - 10644881
Alignment:
Q  353 aataggggtttcccattcatattgatcaccatttctagcaggcctcttttactct 407  Q
    |||||||||||||||||||||||||||||||||| ||| || |||||||||||||    
T  10644935 aataggggtttcccattcatattgatcaccatttatagtagacctcttttactct 10644881  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 407
Target Start/End: Complemental strand, 23537043 - 23536989
Alignment:
Q  353 aataggggtttcccattcatattgatcaccatttctagcaggcctcttttactct 407  Q
    |||||||||||||||||||||||||||||||||| ||| || |||||||||||||    
T  23537043 aataggggtttcccattcatattgatcaccatttatagtagacctcttttactct 23536989  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 476
Target Start/End: Complemental strand, 30998202 - 30998147
Alignment:
Q  421 gtttttgtgaattgttcctgagcttatcaactttaatctatatgcatttctttaga 476  Q
    |||| |||||||| ||||| |||||||||||||||||  |||||||||||||||||    
T  30998202 gtttgtgtgaattcttcctcagcttatcaactttaattcatatgcatttctttaga 30998147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 542
Target Start/End: Complemental strand, 30998122 - 30998077
Alignment:
Q  497 gactttaacttttgcatatcttaatagctctataaagaactactat 542  Q
    |||||||| ||||||||| |||||  ||||||||||||||||||||    
T  30998122 gactttaatttttgcataacttaactgctctataaagaactactat 30998077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 476
Target Start/End: Original strand, 10451585 - 10451640
Alignment:
Q  421 gtttttgtgaattgttcctgagcttatcaactttaatctatatgcatttctttaga 476  Q
    |||| |||||||| ||| |||||||||||||||||||  |||||||||||||||||    
T  10451585 gtttgtgtgaattcttcatgagcttatcaactttaattcatatgcatttctttaga 10451640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 542
Target Start/End: Original strand, 10451663 - 10451708
Alignment:
Q  497 gactttaacttttgcatatcttaatagctctataaagaactactat 542  Q
    |||||||| ||||||||| |||||  ||||||||||||||||||||    
T  10451663 gactttaatttttgcataacttaactgctctataaagaactactat 10451708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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