View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11951_low_3 (Length: 529)
Name: NF11951_low_3
Description: NF11951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11951_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 282 - 524
Target Start/End: Complemental strand, 4963756 - 4963510
Alignment:
| Q |
282 |
acttgagggaacttgcttcggtgtggagcctggataccttcacaacacttctatcaaaatatacccagacatcatcccgactgcccggtaatcttaactt |
381 |
Q |
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| T |
4963756 |
acttgagggaacttgcttcggcgtggagcctggataccttcacaacacttctatcaaaatatacccagacatcatcccgactgcccggtaatcttaactt |
4963657 |
T |
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| Q |
382 |
gatcatttttacaatgagattttttaagtcg----ttaaagttttgcctttggctaagaaaattgagtttgtaaatgtttttaacgatttaatttaaagc |
477 |
Q |
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| T |
4963656 |
gatcatttttacaatgggattttttaagtcgttaattaaagttttgcctttggctaagaaaattgagtttgaaaatgtttttaacgatttaatttaaagc |
4963557 |
T |
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| Q |
478 |
gcatgaaaatatctaccttgagttgtccttactgatgaatctgtgct |
524 |
Q |
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| T |
4963556 |
gcatgaaaatatctaccttgagttgtcctggctgatgaatctgtgct |
4963510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 4964001 - 4963756
Alignment:
| Q |
1 |
gtatattcttcagtaggagctttattttcatttgacttaattgtttcatttataatttttaagtgcagaaaaattacattaaggaagaaactattgaacg |
100 |
Q |
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| T |
4964001 |
gtatattcttcagtaggatctttattttcatttgacttaattgtttcattgataatttttaagtacaaaaaaattacattatggaagaaactattgaacg |
4963902 |
T |
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| Q |
101 |
gatgaggctcgatgaggaggttatcatgaacnnnnnnnnagaagtatattagtgtttctgtaagttcttagatcattaagtt----attatctgttaatt |
196 |
Q |
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| T |
4963901 |
gatgaggctcgatgaggaggttatcatgaactt-----------ttttttagtgtttctgtaagttcttagatcattaagttattaattagctgttaatt |
4963813 |
T |
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| Q |
197 |
ttggcatgttgatctcaagtttcttactgtgatttcctttgcattatgaattagaaa |
253 |
Q |
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| T |
4963812 |
ttggcatgttgctctcaagtttcttactgttaatccctttgcattatgaattagaaa |
4963756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 212 - 372
Target Start/End: Original strand, 8302316 - 8302475
Alignment:
| Q |
212 |
caagtttcttactgtgatttcctttgcattatgaattagaaagtcgaaaacataatgagtgtaattagtgacttgagggaacttgcttcggtgtggagcc |
311 |
Q |
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| T |
8302316 |
caagtttcttactctaatttccttgacattctgtatcagaaagttgaaaacagagtgagtgtacttagcgacttgagggaacttgcttcagcggagagcc |
8302415 |
T |
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| Q |
312 |
tggataccttcacaacacttctatcaaaatatacccagacatcatcccgactgcccggtaa |
372 |
Q |
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| T |
8302416 |
tggatacctttac-actcatctatacaaatatactcgaacatcaacctgactgcccggtaa |
8302475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 8302130 - 8302201
Alignment:
| Q |
57 |
ttttaagtgcagaaaaattacattaaggaagaaactattgaacggatgaggctcgatgaggaggttatcatg |
128 |
Q |
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| T |
8302130 |
ttttaattgcagaaaaactacatcaaggaagaaactattgaacggatgagactagatgaggaggtcatcatg |
8302201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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