View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11951_low_4 (Length: 400)

Name: NF11951_low_4
Description: NF11951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11951_low_4
NF11951_low_4
[»] chr4 (12 HSPs)
chr4 (16-147)||(34492689-34492820)
chr4 (158-264)||(34483967-34484073)
chr4 (25-147)||(34483772-34483895)
chr4 (16-106)||(34494075-34494165)
chr4 (57-147)||(34493984-34494074)
chr4 (158-265)||(34491424-34491531)
chr4 (212-285)||(34492929-34493004)
chr4 (151-193)||(34492887-34492929)
chr4 (20-68)||(34491145-34491194)
chr4 (337-369)||(34493143-34493175)
chr4 (86-153)||(34491238-34491305)
chr4 (22-69)||(34485471-34485519)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 34492689 - 34492820
Alignment:
Q  16 actatccaccttagatatcaatttaggtctataaaacatgttggggttggttggtttacggtagaaatgcgatgagctttactggtggttacaaaaattg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  34492689 actatccaccttagatatcaatttaggtctataaaacatgttggggttggttggtttacggtagaaatgcgatgagctctactggtggttataaaaattg 34492788  T
Q  116 gaaattttaagaatttacatgttgataatttt 147  Q
    |||||||||||||||||||| |||||||||||    
T  34492789 gaaattttaagaatttacatattgataatttt 34492820  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 158 - 264
Target Start/End: Original strand, 34483967 - 34484073
Alignment:
Q  158 gagattaatgccataaaattgagtgaaatgcattgtccaatgaagacaaaaatatgagattgtgagctaaaagttatgaatgcaaaaccaagagcaaaga 257  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| | ||| |||||||||||||| ||||||||||||    
T  34483967 gagattaatgccataaaattgagtgaaatacattgtccaatgaagactaaaatatgagattgtgaggttaaaattatgaatgcaaaatcaagagcaaaga 34484066  T
Q  258 aattgag 264  Q
    |||||||    
T  34484067 aattgag 34484073  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 34483772 - 34483895
Alignment:
Q  25 cttagatatcaatttaggtcta-taaaacatgttggggttggttggtttacggtagaaatgcgatgagctttactggtggttacaaaaattggaaatttt 123  Q
    |||| ||||||||| ||||| | ||||| ||||||||||||||| |||||||||||||| ||||||||||| |||| |||||||||||||||||||||||    
T  34483772 cttatatatcaattaaggtccaataaaatatgttggggttggttagtttacggtagaaacgcgatgagcttcactgatggttacaaaaattggaaatttt 34483871  T
Q  124 aagaatttacatgttgataatttt 147  Q
    |||||||  |||||||||||||||    
T  34483872 aagaattatcatgttgataatttt 34483895  T

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Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 34494165 - 34494075
Alignment:
Q  16 actatccaccttagatatcaatttaggtctataaaacatgttggggttggttggtttacggtagaaatgcgatgagctttactggtggtta 106  Q
    |||||| | |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||    
T  34494165 actatctatcttagatatccatttaggtctataaaacatgttggggttggttgatttacggtagaaacgcgatgagctttactagtggtta 34494075  T

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Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 34494074 - 34493984
Alignment:
Q  57 tggggttggttggtttacggtagaaatgcgatgagctttactggtggttacaaaaattggaaattttaagaatttacatgttgataatttt 147  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||| || ||||  |||||||||||||   ||||||||||||||    
T  34494074 tggggttggttggtttacggtagaaacgcgatgagctttactagtggttaccaagattgataattttaagaattaggatgttgataatttt 34493984  T

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Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 158 - 265
Target Start/End: Original strand, 34491424 - 34491531
Alignment:
Q  158 gagattaatgccataaaattgagtgaaatgcattgtccaatgaagacaaaa-atatgagattgtgagctaaaagttatgaatgcaaaaccaagagcaaag 256  Q
    ||||||||||||||||||||||||||| |  ||||||||||||| || ||| | | ||||||||||| | ||| ||||||||||||||| ||||||||||    
T  34491424 gagattaatgccataaaattgagtgaa-tatattgtccaatgaaaaccaaagaaaggagattgtgaggttaaaattatgaatgcaaaactaagagcaaag 34491522  T
Q  257 aaattgagt 265  Q
    |||||||||    
T  34491523 aaattgagt 34491531  T

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Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 34492929 - 34493004
Alignment:
Q  212 tgagattgtgagctaaaagttatgaatgcaaaaccaagagcaaagaaat--tgagtgtattttgctacaaaactga 285  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||    
T  34492929 tgagattgtgaggtaaaagttatgaatgcaaaaccaagagcaaagaaatagagagtgtattttggtacaaaactga 34493004  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 34492887 - 34492929
Alignment:
Q  151 tgattgagagattaatgccataaaattgagtgaaatgcattgt 193  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34492887 tgattgagagattaatgccataaaattgagtgaaatgcattgt 34492929  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 34491145 - 34491194
Alignment:
Q  20 tccaccttagatatcaattt-aggtctataaaacatgttggggttggttg 68  Q
    ||||||||||||||| |||| ||||||||||||||||||||| |||||||    
T  34491145 tccaccttagatatccatttgaggtctataaaacatgttgggattggttg 34491194  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 34493143 - 34493175
Alignment:
Q  337 actaatcacgtaacataataggagacgcattaa 369  Q
    |||||||||||||||||||||||||||||||||    
T  34493143 actaatcacgtaacataataggagacgcattaa 34493175  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 34491238 - 34491305
Alignment:
Q  86 gatgagctttactggtggttacaaaaattggaaattttaagaatttacatgttgataattttccatga 153  Q
    ||||||||||| | ||||||||||||||||  |||||||| | || | |||||||||||||| |||||    
T  34491238 gatgagctttatttgtggttacaaaaattgagaattttaaaagttaagatgttgataattttgcatga 34491305  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 34485471 - 34485519
Alignment:
Q  22 caccttagatatcaattt-aggtctataaaacatgttggggttggttgg 69  Q
    ||||||||||||  |||| ||||||||||||||||||||| ||||||||    
T  34485471 caccttagatattcatttgaggtctataaaacatgttgggattggttgg 34485519  T

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