View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11951_low_6 (Length: 333)
Name: NF11951_low_6
Description: NF11951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11951_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 6 - 309
Target Start/End: Complemental strand, 27175112 - 27174810
Alignment:
| Q |
6 |
tgttcttgtgcctggaatgcattcaccaattataccaaggaaattagcgataaatcgtttgtttcttctaatgaagaaatttttgattcatatatatctc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
27175112 |
tgttcttgtgcctggaatgcattcaccaattataccaaggaaattagcgataaatcgtttgtttcttcaaatgaagaaatttttgattcatat----ctc |
27175017 |
T |
|
| Q |
106 |
tcaggcatagaaaccagagttttttgcacaattatttcatcagaaaaat---cattaccaagttatctcaccttgttaacaacaatcagcaacttatctg |
202 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27175016 |
tcaggcatagaaaccagagttttttgcacaattctttcatcagaaaaataatcattaccaagttatctcaccttgttaacaacaatcagcaacttatctg |
27174917 |
T |
|
| Q |
203 |
agtactcttttatggtttctgccaccttcattttcagcatctcgaactcccgaatcaaggtgagtatccgcatggttttggttctttaatttccatcata |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27174916 |
agtactcttttatggtttctgccaccttcattttcagcatctcgaactcccgaatcaaggtgagtatccgcatgtttttggttctttaatttccatcata |
27174817 |
T |
|
| Q |
303 |
ttcttat |
309 |
Q |
| |
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||||||| |
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| T |
27174816 |
ttcttat |
27174810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 212 - 309
Target Start/End: Complemental strand, 27231712 - 27231615
Alignment:
| Q |
212 |
ttatggtttctgccaccttcattttcagcatctcgaactcccgaatcaaggtgagtatccgcatggttttggttctttaatttccatcatattcttat |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27231712 |
ttatggtttctgccaccttcattttcagcatctcgaactcccgaatcaaggtgagtatccgcatgtttttggttctttaatttccatcatattcttat |
27231615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 307
Target Start/End: Complemental strand, 17532941 - 17532647
Alignment:
| Q |
8 |
ttcttgtgcctggaatgcattcaccaattataccaaggaaattagcgataaatcgtttgtttcttctaatgaagaaatttttgattcatatatatctctc |
107 |
Q |
| |
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|||||||||||| |||||||||| ||||| ||| |||||||| || ||||| ||||||||||||||| ||||||||||||| |||||| |||| |
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| T |
17532941 |
ttcttgtgcctgtaatgcattcatcaattttacaaaggaaatgctagacaaatcttttgtttcttctaataaagaaatttttgactcatat----ctcta |
17532846 |
T |
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| Q |
108 |
aggcatagaaaccagagttttttgcacaattatttcatcagaaaaatcattaccaagttatctcaccttgttaacaacaatcagcaacttatctgagtac |
207 |
Q |
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||||| |||||||| | ||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||| || |||||||| || ||| |
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| T |
17532845 |
aggcacagaaaccaaaaaaatttaagcaattctttcatcagaaaaatcattaccaagtaatctcaccttgttaacaacgcccaacaacttatttgcatac |
17532746 |
T |
|
| Q |
208 |
tcttttatggtttctgccaccttcattttcagcatctcgaactcccgaatcaaggtgagtatccgcatggttttggttctttaatttccatcatattctt |
307 |
Q |
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| T |
17532745 |
tcttttatggttaccgtctccttcatttttagcatctcgaactcttgaatcaggttgagt-tttgcatgtttttggttctttcatttccctcatattctt |
17532647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 307
Target Start/End: Original strand, 14805583 - 14805755
Alignment:
| Q |
134 |
caattatttcatcagaaaaatcattaccaagttatctcaccttgttaacaacaatcagcaacttatctgagtactcttttatggtttctgccaccttcat |
233 |
Q |
| |
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||||| |||||||| ||||||||||||||||| ||||||||||||||||| | || |||||||| || || |||||||||||| ||| ||||||| |
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| T |
14805583 |
caattctttcatcataaaaatcattaccaagtaatctcaccttgttaacagcgcccaacaacttatttgcacacaattttatggtttccgcctccttcat |
14805682 |
T |
|
| Q |
234 |
tttcagcatctcgaactcccgaatcaaggtgagtatccgcatggttttggttctttaatttccatcatattctt |
307 |
Q |
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||| |||||||||||||| |||||| | ||||| | ||||| |||||||||||| |||||| || ||||||| |
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| T |
14805683 |
ttttagcatctcgaactcttgaatcaggttgagt-tttgcatgtttttggttctttcatttccctcgtattctt |
14805755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 307
Target Start/End: Original strand, 15252577 - 15252749
Alignment:
| Q |
134 |
caattatttcatcagaaaaatcattaccaagttatctcaccttgttaacaacaatcagcaacttatctgagtactcttttatggtttctgccaccttcat |
233 |
Q |
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||||| |||||||| ||||||||||||||||| ||||||||||||||||| | || |||||||| || || |||||||||||| ||| ||||||| |
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| T |
15252577 |
caattctttcatcataaaaatcattaccaagtaatctcaccttgttaacagcgcccaacaacttatttgcacacaattttatggtttccgcctccttcat |
15252676 |
T |
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| Q |
234 |
tttcagcatctcgaactcccgaatcaaggtgagtatccgcatggttttggttctttaatttccatcatattctt |
307 |
Q |
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||| |||||||||||||| |||||| | ||||| | ||||| |||||||||||| |||||| || ||||||| |
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| T |
15252677 |
ttttagcatctcgaactcttgaatcaggttgagt-tttgcatgtttttggttctttcatttccctcgtattctt |
15252749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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