View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11952_high_1 (Length: 817)

Name: NF11952_high_1
Description: NF11952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11952_high_1
NF11952_high_1
[»] chr4 (1 HSPs)
chr4 (11-799)||(39212347-39213166)


Alignment Details
Target: chr4 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 11 - 799
Target Start/End: Original strand, 39212347 - 39213166
Alignment:
Q  11 cagagagcgagttgttacggaggctcatgactcggagttggtcgagccgggttaacgtgtttggtgagaaaaaaccggtgaggtttaacgattgaacaac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39212347 cagagagcgagttgttacggaggctcatgactcggagttggtcgagccgggttaacgtgtttggtgagaaaaaaccggtgaggtttaacgattgaacaac 39212446  T
Q  111 gtagcgtactactctgccttgtgcacatttgactccttgccattcgcagtaatcataaggttcgtttattgtatagagtagtttgttgttttggtctgcg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39212447 gtagcgtactactctgccttgtgcacatttgactccttgccattcgcagtaatcataaggttcgtttattgtatagagtagtttgttgttttggtctgcg 39212546  T
Q  211 ttttgtttaaacgatagtaaagatactgcgtcttgtgatagtgtagagttggtagaggaagctaatgtgaagaaaaagaagagagggaagaagggtgtta 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39212547 ttttgtttaaacgatagtaaagatactgcgtcttgtgatagtgtagagttggtagaggaagctaatgtgaagaaaaagaagagagggaagaagggtgtta 39212646  T
Q  311 ttaaacgaggcatgtttagtgtatgtgtatgcaaatgtaaggtactagt-------gta-----tgtgattcggaatgtgtttggttttgagtgtcttga 398  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||       |||     ||||||||||||||||||||||||||||||| ||||    
T  39212647 ttaaacgaggcatgtttagtgtatgtgtatgcaaaagtaaggtactggtagtggtggtactctttgtgattcggaatgtgtttggttttgagtgttttga 39212746  T
Q  399 ggggggtgtgaaaacagaaacatgattt------gtagtagtagtnnnnnnntgaggaaagtgtagatagaatcgaatcgaatcgaatcgagtgagctat 492  Q
    ||||||||||||||||||||||||||||      |||||||||||       ||||||||||||||||||||          |||| |    ||| ||||    
T  39212747 ggggggtgtgaaaacagaaacatgatttgtagtagtagtagtagtaaaaaaatgaggaaagtgtagatagaa----------tcgagtgacctgacctat 39212836  T
Q  493 gtgtgaatgaagagtgtaaagaggagtaa------------------tgctaatgggtggtagtaggaagtgaagtagtgcggagcagctggaattctag 574  Q
    |||||||||||||||||||||| ||||||                  ||||||||||||||||||||||||     ||||||||||||||||||||||||    
T  39212837 gtgtgaatgaagagtgtaaagaagagtaaggttgaaagtgctactaatgctaatgggtggtagtaggaagt-----agtgcggagcagctggaattctag 39212931  T
Q  575 tagcactcacgtgagtgaa-------agtgaggaacggtggaaattattttgggtttttactttgtttc----tttctatacatgtgaactcaactgtgt 663  Q
    |||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  39212932 tagcactcacgtgagtgaactgtgaaagtgaggaacggtggaaattattttgggtttttactttgtttctttctttctatacatgtgaactcaactgtgt 39213031  T
Q  664 acacagtgtgtcacttcaattttatttatttatattgcataatttgaagattgagtgctggacttccaagtcccactctgctctgcacgcccgtgagccg 763  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39213032 acacagtgtgtcacttcaattttatttatttatattgcataatttgaagattgagtgctggacttccaagtcccactctgctctgcacgcccgtgagccg 39213131  T
Q  764 catgtacacagagcacaagtgcgaaaaccatggtct 799  Q
    |||||||||||  || || |||||||||||| ||||    
T  39213132 catgtacacagcaca-aaatgcgaaaaccatagtct 39213166  T

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