View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11952_high_13 (Length: 437)
Name: NF11952_high_13
Description: NF11952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11952_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 45773137 - 45773525
Alignment:
| Q |
1 |
ttaaatgaatttagttaaggtgaagaagtgtgaatgagaaagtaattgaagaagaagtgggaacacttggattcttcaactatagttgtagagagtgtcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45773137 |
ttaaatgaatttagttaaggtgaagaagtgtgaatgagaaagtagttgaagaagaagtgggaacacttggattcttctactatagttgtagagagtgtcg |
45773236 |
T |
|
| Q |
101 |
gagactagaattggtcatggaactctgttttttatagtccaatgtttcaaccccacgcgcaaatacaaggttctccttccaaaatctttacaactgtgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45773237 |
gagactagaattggtcatggaactctgttttttatagtccaatgtttcaaccccacgcgcaaatacaaggttcttcttccaaaatctttacaactgtgga |
45773336 |
T |
|
| Q |
201 |
tgaaaacgagtcatcagcatttctattggaacacttagataaatagacatttcaattaagtagtaaaccactattcaactttgtcttattatcaattttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45773337 |
tgaaaacgagtcatcagcatttctattggaacacttagatgaatacacatttcaattaagtagtaaa-cactattcaactttgtcttattatcaattttt |
45773435 |
T |
|
| Q |
301 |
taaccgagtggttgcattatcaattaagtagtaaacactattctatattatcaaggtttcattctttttgatataaaataaataattgta |
390 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45773436 |
taaccgagttgttgcattatcaattaagtagtaaacactattctatattatcaaggtttcattctttttgatataaaataaataattgta |
45773525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University