View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11952_high_18 (Length: 347)
Name: NF11952_high_18
Description: NF11952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11952_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 320
Target Start/End: Original strand, 24366522 - 24366828
Alignment:
| Q |
15 |
atgaaccataatattctaaatttgtcatgttaaaattcaaatttagagatgatcaagtaaatgacaaaa-aattataagcagcagagcgaatcggatatg |
113 |
Q |
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| T |
24366522 |
atgaaccataatattctaaatttgtcatgttaaagttcaaatttagagatgatcaagtaaatgacaaaaaaattataagcagcagagcaaatcggatatg |
24366621 |
T |
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| Q |
114 |
tatggacgaatatattcagctggtcctattctatgtgaacaaaactgatatggacagcatgaaataacaaaatgaaattgggttcattgcaatttagaca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24366622 |
tatggacgaatatattcagctggtcctattctatgtgaacaaatctgatatggacagcatgaaataacaaaatgaaattgggttcattgcaatttagaca |
24366721 |
T |
|
| Q |
214 |
ctagcctagaatgtcacaaagaagtcttaacctactccataacaggaaacctctcctatgggatcaaaatctaaaaatatcaaacatgttttgctttcta |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24366722 |
ctagcctagaatgtcacaaagaagtcttaacctactccataacaggaaacctctcctatgggatcaaaatctaaaaatatcaaacatgttttgctttcta |
24366821 |
T |
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| Q |
314 |
ttggtaa |
320 |
Q |
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||||||| |
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| T |
24366822 |
ttggtaa |
24366828 |
T |
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