View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11952_high_19 (Length: 320)
Name: NF11952_high_19
Description: NF11952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11952_high_19 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 53 - 302
Target Start/End: Complemental strand, 16698605 - 16698356
Alignment:
| Q |
53 |
aaagaattttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggacccttgggcctcttaaaacttccactataatgataatgggaatac |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16698605 |
aaagaattttagtgtggaaatccttctcaatgtgagaaagggaaaaattatgggacccttggacctcttaaaacttccactataatgataatgggaatac |
16698506 |
T |
|
| Q |
153 |
aacttcacccttacgtggatctcactacaatgtatctctcaatttgtaagaaacactctcacgaattgggtctctatttctcccacaagaaaactctcta |
252 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16698505 |
aacttcacccttatgtggatctcactacaatgtatctctcaatttgtaagaaacactctcacgaattgggtccctatttctcccacaagaaaactctcta |
16698406 |
T |
|
| Q |
253 |
tgaggatcacttttctcttgagcaaggctctcttcctcttttgctttttg |
302 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
16698405 |
tgaggatcacttttctcttgagcaaggctatcttcctctcttgctttttg |
16698356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 12 - 155
Target Start/End: Original strand, 22763858 - 22764003
Alignment:
| Q |
12 |
ataggcactagcggaaacgcgaaatataagcttaatgacacaaaga--attttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggacc |
109 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| |||||| ||||||| ||||||| |||||| |||||||||| ||||||||| |||||||| |||||| |
|
|
| T |
22763858 |
ataggcactagcagaaacgtgaaatataagcgtaatgatacaaagagaattttagcatggaaaaccttctcaatatgagaaagggaaaaaccacgggacc |
22763957 |
T |
|
| Q |
110 |
cttgggcctcttaaaacttccactataatgataatgggaatacaac |
155 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22763958 |
attgggcctcttaaaacttatgctataatgataatgggaatacaac |
22764003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 33808145 - 33808037
Alignment:
| Q |
45 |
aatgacacaa-agaattttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggacccttgggcctcttaaaacttccactataatgataa |
143 |
Q |
| |
|
|||||||||| | |||||||| ||||||| ||||||||||||||| |||| |||||||| ||||||| | ||||||||||| | ||||||||||| |||| |
|
|
| T |
33808145 |
aatgacacaacaaaattttagcgtggaaaaccttctcaatgtgagtaagg-aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataa |
33808048 |
T |
|
| Q |
144 |
tgggaatacaa |
154 |
Q |
| |
|
||||||||||| |
|
|
| T |
33808047 |
tgggaatacaa |
33808037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 33811799 - 33811691
Alignment:
| Q |
45 |
aatgacacaa-agaattttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggacccttgggcctcttaaaacttccactataatgataa |
143 |
Q |
| |
|
|||||||||| | |||||||| ||||||| ||||||||||||||| |||| |||||||| ||||||| | ||||||||||| | ||||||||||| |||| |
|
|
| T |
33811799 |
aatgacacaacaaaattttagcgtggaaaaccttctcaatgtgagtaagg-aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataa |
33811702 |
T |
|
| Q |
144 |
tgggaatacaa |
154 |
Q |
| |
|
||||||||||| |
|
|
| T |
33811701 |
tgggaatacaa |
33811691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 33816717 - 33816609
Alignment:
| Q |
45 |
aatgacacaa-agaattttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggacccttgggcctcttaaaacttccactataatgataa |
143 |
Q |
| |
|
|||||||||| | |||||||| ||||||| ||||||||||||||| |||| |||||||| ||||||| | ||||||||||| | ||||||||||| |||| |
|
|
| T |
33816717 |
aatgacacaacaaaattttagcgtggaaaaccttctcaatgtgagtaagg-aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataa |
33816620 |
T |
|
| Q |
144 |
tgggaatacaa |
154 |
Q |
| |
|
||||||||||| |
|
|
| T |
33816619 |
tgggaatacaa |
33816609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 297
Target Start/End: Original strand, 4835619 - 4835908
Alignment:
| Q |
12 |
ataggcactagcggaaacgcgaaatataagcttaatgacacaaagaattttagtgtggaaatccttctcaatgtgagaaagg-aaaaaaccatgggaccc |
110 |
Q |
| |
|
||||||||||| ||||||| ||||||||| | |||||||||| |||||||||| ||||||| |||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
4835619 |
ataggcactagtggaaacgtgaaatataaacgtaatgacacagagaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggaccc |
4835718 |
T |
|
| Q |
111 |
ttgggcctcttaaaacttccactataatgataatgggaat---acaacttcacccttacgtggatctcactacaatgtatctctcaatttgtaagaaaca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
4835719 |
ttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcacccttaggtggatctcactacaatatatctctcaatttgtaaggaaca |
4835818 |
T |
|
| Q |
208 |
ctctcacgaattgggtctctatttctcccacaagaaaactctctatgaggatcacttttctcttgagcaaggctctcttcctcttttgct |
297 |
Q |
| |
|
||||||| |||||| || ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
4835819 |
ctctcacaaattggctcactatttctctcacaagaaaactctctatgaggatgacttttctcttgagcaaggctctctttctctcttgct |
4835908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 302
Target Start/End: Original strand, 25857175 - 25857468
Alignment:
| Q |
12 |
ataggcactagcggaaacgcgaaatataagcttaatgacacaaagaattttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggaccct |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||| |||||||||| ||||||| |||||||||||||||||| | |||||||| |||||||| |
|
|
| T |
25857175 |
ataggcactagcggaaacgtgaaatataagcgtaatgacacagagaattttagcgtggaaaaccttctcaatgtgagaaaaggaaaaaccacgggaccct |
25857274 |
T |
|
| Q |
112 |
tgggcctcttaaaacttccactataatgataatgggaat---acaacttcacccttacgtggatctcactacaatgtatctctcaatttgtaagaaacac |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||| |||||||||| ||||| |
|
|
| T |
25857275 |
tgggcctcttaaaacttccactataatgataatgggaatacaacaacttcacctttaggtggatctcactacaatatatctcttaatttgtaaggaacac |
25857374 |
T |
|
| Q |
209 |
tctcacgaattgggtctctatttctcccacaagaaaactctctatgaggatcacttttctcttgagcaaggctctcttcctcttttgctttttg |
302 |
Q |
| |
|
|||||| |||||| || ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||| |||| |
|
|
| T |
25857375 |
tctcacaaattggctcactatttctctcacaagaaaactctctatgaggatgacttttctcttgagcaaggctctctttctctcttgctctttg |
25857468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 12 - 297
Target Start/End: Original strand, 4842692 - 4842983
Alignment:
| Q |
12 |
ataggcactagcggaaacgcgaaatataagcttaatgacacaaaga--attttagtgtggaaatccttctcaatgtgagaaagg-aaaaaaccatgggac |
108 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||| ||||||| ||||||| |||||||||||||||||||| ||||||||| |||| |
|
|
| T |
4842692 |
ataggcactagcggaaacgtgaaatataagtgtaatgacacaaagagaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacaggac |
4842791 |
T |
|
| Q |
109 |
ccttgggcctcttaaaacttccactataatgataatgggaatacaa---cttcacccttacgtggatctcactacaatgtatctctcaatttgtaagaaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| |||| || |
|
|
| T |
4842792 |
ccttgggcctcttaaaacttccactataatgataataggaatacaacaacttcacccttaggtggatctcactacaatatatctctcaatttttaaggaa |
4842891 |
T |
|
| Q |
206 |
cactctcacgaattgggtctctatttctcccacaagaaaactctctatgaggatcacttttctcttgagcaaggctctcttcctcttttgct |
297 |
Q |
| |
|
||||||||| |||||| || |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
4842892 |
cactctcacaaattggctcaatatttctctcacaagaaaactctttatgaggatgacttttctcttgagcaaggctctctttctctcttgct |
4842983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 33 - 272
Target Start/End: Original strand, 13465024 - 13465264
Alignment:
| Q |
33 |
aaatataagcttaatgacacaaagaattttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggacccttgggcctcttaaaacttccac |
132 |
Q |
| |
|
||||||| || |||||||||||| |||||||| ||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
13465024 |
aaatatatgcgtaatgacacaaaaaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacaggacccttgggcctcttaaaacatccac |
13465123 |
T |
|
| Q |
133 |
tataatgataatgggaatacaac---ttcacccttacgtggatctcactacaatgtatctctcaatttgtaagaaacactctcacgaattgggtctctat |
229 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| |||||||| || |||||| || |||| |
|
|
| T |
13465124 |
tataatgataatgggaatacaacaagttcaccctcaggtggatctcactacaatgtatctctcaatttgtaaggaacactcttacaaattggttcactat |
13465223 |
T |
|
| Q |
230 |
ttctcccacaagaaaactctctatgaggatcacttttctcttg |
272 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13465224 |
ttct--cacaagaaaacattctatgaggatcacttttctcttg |
13465264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 12 - 293
Target Start/End: Original strand, 24379323 - 24379609
Alignment:
| Q |
12 |
ataggcactagcggaaacgcgaaatataagcttaatgacacaaaga--attttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggacc |
109 |
Q |
| |
|
||||||||||| ||||||| |||||||| | |||||||| | ||| |||||| ||||||| |||||||||||||||||||| |||||||| |||| | |
|
|
| T |
24379323 |
ataggcactagtggaaacgtaaaatataaacgtaatgacatagagataattttaacgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggatc |
24379422 |
T |
|
| Q |
110 |
cttgggcctcttaaaacttccactataatgataatgggaatacaa---cttcacccttacgtggatctcactacaatgtatctctcaatttgtaagaaac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||| ||| |
|
|
| T |
24379423 |
tttgggcctcttaaaacttccactataatgataataggaatacaacaacttcacccttaggtggatctccctacaatatatctctcaatttgtaaggaac |
24379522 |
T |
|
| Q |
207 |
actctcacgaattgggtctctatttctcccacaagaaaactctctatgaggatcacttttctcttgagcaaggctctcttcctcttt |
293 |
Q |
| |
|
||||||| |||||| || |||||||| |||||||||||||||||||||||| |||||||||| ||||||| ||||||| |||||| |
|
|
| T |
24379523 |
actctcataaattggctcactatttctttcacaagaaaactctctatgaggatgacttttctctcgagcaagactctctttctcttt |
24379609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 12 - 300
Target Start/End: Original strand, 27340980 - 27341269
Alignment:
| Q |
12 |
ataggcactagcggaaacgcgaaatataagcttaatgacacaaagaattttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggaccct |
111 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||| |||||||||| ||||||| |||||||||||| ||||||| |||||||| |||||||| |
|
|
| T |
27340980 |
ataggcactagcggaaacatgaaatataagcgtaatgacacagagaattttagcgtggaaaaccttctcaatgtaagaaagg-aaaaaccacgggaccct |
27341078 |
T |
|
| Q |
112 |
tgggcctcttaaaacttccactataatgataatgggaatac---aacttcacccttacgtggatctcactacaatgtatctctcaatttgtaagaaacac |
208 |
Q |
| |
|
|| |||||| ||||||| |||| ||||||||||| ||||| ||||| | |||| |||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
27341079 |
tgtacctctt-aaacttctactacaatgataatggaaatacaataactt--ctcttagatggatctcactacaatatatctctcaatttgtaaggaacac |
27341175 |
T |
|
| Q |
209 |
tctcacgaattgggtctctatttctcccacaagaaaactctctatgaggatcacttttctc--ttgagcaaggctctcttcctcttttgctttt |
300 |
Q |
| |
|
|||||| |||| || ||||||||| ||||| ||||||| ||||||||| ||||||||| ||||||| | ||||||| |||| |||||||| |
|
|
| T |
27341176 |
tctcacaggttggctcactatttctctcacaaagaaactctatatgaggataacttttctcttttgagcatgactctctttctctcttgctttt |
27341269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 92 - 300
Target Start/End: Complemental strand, 4603748 - 4603539
Alignment:
| Q |
92 |
ggaaaaaaccatgggacccttgggcctcttaaaacttccactataatgataatgggaatacaac---ttcacccttacgtggatctcactacaatgtatc |
188 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| ||||||||||||||||||||| |||||||| || ||||||| ||||||||||||||||| |||| |
|
|
| T |
4603748 |
ggaaaaaaccacgggacctttgggcctcttaaaccttccactataatgataatggaaatacaacaactttacccttaggtggatctcactacaatatatc |
4603649 |
T |
|
| Q |
189 |
tctcaatttgtaagaaacactctcacgaattgggtctctatttctcccacaagaaaactctctatgaggatcacttttctcttgagcaaggctctcttcc |
288 |
Q |
| |
|
| |||||||||||| |||||| || |||||| |||||||||||| |||||||||||||| ||||| ||| |||||||||||||||||| ||||||| | |
|
|
| T |
4603648 |
tttcaatttgtaaggaacacttaca--aattggctctctatttctctcacaagaaaactctttatgaagataacttttctcttgagcaagactctctttc |
4603551 |
T |
|
| Q |
289 |
tcttttgctttt |
300 |
Q |
| |
|
| | |||||||| |
|
|
| T |
4603550 |
tatcttgctttt |
4603539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 32 - 283
Target Start/End: Complemental strand, 17845986 - 17845727
Alignment:
| Q |
32 |
gaaatataagcttaatgacacaa-agaattttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggacccttgggcctcttaaaacttcc |
130 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||||| ||||||| ||||| ||||||||| ||||||||| ||| ||||| |||| ||||||||| ||||| |
|
|
| T |
17845986 |
gaaatataagcgtaaagacacaagagaattttagagtggaaaaccttcccaatgtgaggaaggaaaaa-ccacaggacctttggacctcttaaa-cttcc |
17845889 |
T |
|
| Q |
131 |
actataatgataatgggaatacaac---ttcacccttacgtggatctcactacaatgtatctctcaatttgtaagaaacactctca----cgaattgggt |
223 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||| ||| ||||||||||||| |||||||||||||||||| |||||||||| ||||| | |
|
|
| T |
17845888 |
actataatgataatggaaatacaacaacttcacccttaggtgaatctcactacaatatatctctcaatttgtaaggaacactctcataattaaattgact |
17845789 |
T |
|
| Q |
224 |
ctctatttctcccacaagaaaactctctatgaggatcacttttctc--ttgagcaaggctct |
283 |
Q |
| |
|
| |||||||| |||||| ||||||| ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
17845788 |
caatatttctctcacaaggaaactctttattaggatcacttttctcttttgagcaaggctct |
17845727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 302
Target Start/End: Original strand, 38994115 - 38994379
Alignment:
| Q |
23 |
cggaaacgcgaaatataagcttaatgacacaaaga--attttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggacccttgggcctct |
120 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| |||||| ||||||| ||||||||||| |||||||| |||||||| |||||||| | |||||| |
|
|
| T |
38994115 |
cggaaacatgaaatataaatgtaatgacacaaagagaattttaacgtggaaaaccttctcaatgcgagaaagggaaaaaccacgggaccctcgagcctct |
38994214 |
T |
|
| Q |
121 |
taaaacttccactataatgataatgggaatacaacttcacccttacgtggatctcactacaatgtatctctcaatttgtaagaaacactctcacgaattg |
220 |
Q |
| |
|
|||||||| || |||||||||| ||||| ||||||||||||||||| |||||||||||||||||| |||||| |||| ||||| |
|
|
| T |
38994215 |
taaaactttcattataatgata------------------ccttaggtggatctcactacaatatatctctcaatttgtaaggaacactatcacaaattg |
38994296 |
T |
|
| Q |
221 |
ggtctctatttctcccacaa-gaaaactctctatgaggatcacttttctcttgagcaaggctctcttcctcttttgctttttg |
302 |
Q |
| |
|
| || |||||||| ||||| ||||||||||||||||||| |||||||| |||||||| ||| ||| |||| ||| |||||| |
|
|
| T |
38994297 |
gctcattatttctctcacaaggaaaactctctatgaggattacttttcttttgagcaaaactccctttctctcttgttttttg |
38994379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 292
Target Start/End: Complemental strand, 41481771 - 41481485
Alignment:
| Q |
12 |
ataggcactagcggaaacgcgaaatataagcttaatgacacaaaga--attttagtgtggaaatccttctcaatgtgagaaagg-aaaaaaccatgggac |
108 |
Q |
| |
|
|||| |||||||||||||| ||||||||| | |||||||||||||| ||||||| ||||||| |||||||||| ||||||||| ||||||||| ||||| |
|
|
| T |
41481771 |
atagacactagcggaaacgtgaaatataaacgtaatgacacaaagagaattttagcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggac |
41481672 |
T |
|
| Q |
109 |
ccttgggcctcttaaaacttccactataatgataatgggaatacaac---ttcacccttacgtggatctcactacaatgtatctctcaatttgtaagaaa |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
41481671 |
ccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttcacccttaggtggatctcactacaatatatctctcaatttgtaaggaa |
41481572 |
T |
|
| Q |
206 |
cactctcacgaattgggtctctatttctcccacaagaaaactctctatgaggatcacttttctcttgagcaaggctctcttcctctt |
292 |
Q |
| |
|
||||||||| |||||| || ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
41481571 |
cactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatgacttttctcttgagcaaggctctctttctctt |
41481485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 12 - 292
Target Start/End: Complemental strand, 36167769 - 36167484
Alignment:
| Q |
12 |
ataggcactagcggaaacgcgaaatataagcttaatgacacaaaga--attttagtgtggaaatccttctcaatgtgagaaagg-aaaaaaccatgggac |
108 |
Q |
| |
|
||||||||||||||||||| ||||||||| | |||||||||||||| ||||||| ||||||| |||||||||| ||||||||| ||||||||| || || |
|
|
| T |
36167769 |
ataggcactagcggaaacgtgaaatataaacgtaatgacacaaagagaattttagcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgg-ac |
36167671 |
T |
|
| Q |
109 |
ccttgggcctcttaaaacttccactataatgataatgggaatacaac---ttcacccttacgtggatctcactacaatgtatctctcaatttgtaagaaa |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||| |||||||||||||||||| || |
|
|
| T |
36167670 |
ccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttcacccttaggtggatctcactataatatatctctcaatttgtaaggaa |
36167571 |
T |
|
| Q |
206 |
cactctcacgaattgggtctctatttctcccacaagaaaactctctatgaggatcacttttctcttgagcaaggctctcttcctctt |
292 |
Q |
| |
|
||||||||| |||||| || ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
36167570 |
cactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatgacttttctcttgagcaaggctctctttctctt |
36167484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 12 - 302
Target Start/End: Original strand, 18951168 - 18951460
Alignment:
| Q |
12 |
ataggcactagcggaaacgcgaaatataagcttaatgacacaaagaattttagtgtggaaatccttctcaatgtgagaaagg-aaaaaaccatgggaccc |
110 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||| ||||||||| |||||| |||||||||||||||||||| ||||||||| | |||| |
|
|
| T |
18951168 |
ataggcactagcggaaacatgaaatataagcgtaatgacaca--gaattttagcatggaaaaccttctcaatgtgagaaagggaaaaaaccacgagacct |
18951265 |
T |
|
| Q |
111 |
ttgggcctcttaaaacttccactataatgataatgggaatacaa---cttcacccttacgtggatctcactacaatgtatctctcaatttgtaagaaaca |
207 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| ||| |||||||||||||||||| |||| |
|
|
| T |
18951266 |
ttgggcttcttaaaacttccactataatgataatgggaatacaacaacttcacccttaggttgatctcactataatttatctctcaatttgtaaggaaca |
18951365 |
T |
|
| Q |
208 |
ctctcacgaattgggtctctatttctcccacaagaaaactctctatgaggatcacttttctcttgagcaaggctctcttcctcttttgctttttg |
302 |
Q |
| |
|
||||||| |||||| || |||||| | || ||||||||||||| |||||| ||||||||||| | |||| |||| || |||| ||| |||||| |
|
|
| T |
18951366 |
ctctcacaaattggctcattatttccctcaagagaaaactctctacgaggatgacttttctcttaaacaagactctttttctctcttgatttttg |
18951460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 302
Target Start/End: Original strand, 54967254 - 54967550
Alignment:
| Q |
12 |
ataggcactagcggaaacgcgaaatataagcttaatgacacaaaga--attttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggacc |
109 |
Q |
| |
|
||||||||||||||||||| |||||| |||| |||||||||||||| ||||||| ||||||| |||||||||| ||||||||| |||||||| |||||| |
|
|
| T |
54967254 |
ataggcactagcggaaacgtgaaataaaagcgtaatgacacaaagagaattttagcgtggaaaaccttctcaatatgagaaagggaaaaaccacgggacc |
54967353 |
T |
|
| Q |
110 |
cttgggcctcttaaaa-cttccactataatgataatgggaatacaa---cttcacccttacgtggatctcactacaatgtatctctcaatttgtaagaaa |
205 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
54967354 |
cttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacccttaggtggatctcactacaatatatctctcaatttgtaaggaa |
54967453 |
T |
|
| Q |
206 |
cactctcacgaattgggtctctatttctcccacaagaaaactctctatgaggatcacttttctcttgagcaaggctctcttcctcttttgctttttg |
302 |
Q |
| |
|
||||||||| |||||| || ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| |||| ||||| |||| |
|
|
| T |
54967454 |
cactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatgacttttctcttgagcaaggttctctttctctcttgctctttg |
54967550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 12 - 292
Target Start/End: Original strand, 44782568 - 44782854
Alignment:
| Q |
12 |
ataggcactagcggaaacgcgaaatataagcttaatgacacaaaga--attttagtgtggaaatccttctcaatgtgagaaagg-aaaaaaccatgggac |
108 |
Q |
| |
|
|||| |||||||||||||| ||||||||| | |||||||||||||| ||||||| ||||||| |||||||||| ||||||||| ||||||||| ||||| |
|
|
| T |
44782568 |
atagacactagcggaaacgtgaaatataaacgtaatgacacaaagagaattttagcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggac |
44782667 |
T |
|
| Q |
109 |
ccttgggcctcttaaaacttccactataatgataatgggaatacaa---cttcacccttacgtggatctcactacaatgtatctctcaatttgtaagaaa |
205 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||| || |
|
|
| T |
44782668 |
ccttggacctcttaaaacttccactataatgataatgggaatacaacaacttcacccttaggtggatctcactacaatatatctctcaatttgcaaggaa |
44782767 |
T |
|
| Q |
206 |
cactctcacgaattgggtctctatttctcccacaagaaaactctctatgaggatcacttttctcttgagcaaggctctcttcctctt |
292 |
Q |
| |
|
||||||||| |||||| || ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
44782768 |
cactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatgacttttctcttgagcaaggctctctttctctt |
44782854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 54979890 - 54980182
Alignment:
| Q |
16 |
gcactagcggaaacgcgaaatataagcttaatgacacaaaga--attttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggacccttg |
113 |
Q |
| |
|
||||||||||||||| |||||| ||| |||||||||||||| ||||||| |||||| |||||||||| ||||||||| |||||||| |||||||||| |
|
|
| T |
54979890 |
gcactagcggaaacgtgaaataaaagtgtaatgacacaaagagaattttagcatggaaaaccttctcaatatgagaaagggaaaaaccacgggacccttg |
54979989 |
T |
|
| Q |
114 |
ggcctcttaaaa-cttccactataatgataatgggaatacaa---cttcacccttacgtggatctcactacaatgtatctctcaatttgtaagaaacact |
209 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
54979990 |
ggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacccttaggtggatctcactacaatatatctctcaatttgtaaggaacact |
54980089 |
T |
|
| Q |
210 |
ctcacgaattgggtctctatttctcccacaagaaaactctctatgaggatcacttttctcttgagcaaggctctcttcctcttttgctttttg |
302 |
Q |
| |
|
||||| |||||| || ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| |||| ||||| |||| |
|
|
| T |
54980090 |
ctcacaaattggctcgctatttctctcacaagaaaactctctatgaggatgacttttctcttgagcaaggttctctttctctcttgctctttg |
54980182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 39298947 - 39298661
Alignment:
| Q |
20 |
tagcggaaacgcgaaatataagcttaatgacacaaaga--attttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggacccttgggcc |
117 |
Q |
| |
|
|||| |||||| |||||||||| ||||||||| |||| ||||||||||| ||| |||||||||||||| ||||||||| | | |||||||||| ||| |
|
|
| T |
39298947 |
tagcagaaacgtgaaatataagtgtaatgacacgaagataattttagtgtgaaaaaccttctcaatgtgatgaaggaaaaatc-acgggacccttgtgcc |
39298849 |
T |
|
| Q |
118 |
tcttaaaacttccactataatgataatgggaatacaac---ttcacccttacgtggatctcactacaatgtatctctcaatttgtaagaaacactctcac |
214 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| |||||||||| |||||||| |||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
39298848 |
tcttaaa-cttccactataatgataaagggaatacaacaacttcacccttaggtggatctaactacaatatatctctcaatttgtaag-gacactctcac |
39298751 |
T |
|
| Q |
215 |
gaattgggtctctatttctcccacaagaaaactctctatgaggatcacttttctc--ttgagcaaggctctcttcctcttttgctttttg |
302 |
Q |
| |
|
|||||| || ||||||||| ||||| ||||||| |||||||||||||||||| ||||||||| ||||||| |||| |||||||||| |
|
|
| T |
39298750 |
aaattggctcactatttctctcacaaaggaactctccatgaggatcacttttctcatttgagcaagactctctttctctcttgctttttg |
39298661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 57 - 271
Target Start/End: Complemental strand, 17645893 - 17645685
Alignment:
| Q |
57 |
aattttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggacccttgggcctcttaaaacttccactataatgataatgggaatacaact |
156 |
Q |
| |
|
|||||||| ||||||| |||||||||| | | ||| |||||||| ||||| |||| || ||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
17645893 |
aattttagcgtggaaaaccttctcaatataaaaaa---aaaaaccacgggactcttgagcgtcttaaa-cttccactataatgataatgacaatacaaca |
17645798 |
T |
|
| Q |
157 |
tcacccttacgtggatctcactacaatgtatctctcaatttgtaagaaacactctcacgaattgggtctctatttctcccacaagaaaactctctatgag |
256 |
Q |
| |
|
|||| || |||||||||||||||| ||||||||||||||||||| |||||||| || |||||| || |||||| || |||||| ||||||| |||||| |
|
|
| T |
17645797 |
--acccctaggtggatctcactacaacgtatctctcaatttgtaaggaacactcttacaaattggctcactatttatctcacaaggaaactctttatgag |
17645700 |
T |
|
| Q |
257 |
gatcacttttctctt |
271 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
17645699 |
aatcactttcctctt |
17645685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 12 - 183
Target Start/End: Original strand, 18556349 - 18556523
Alignment:
| Q |
12 |
ataggcactagcggaaacgcgaaatataagcttaatgacacaaagaattttagtgtggaaatccttctcaatgtgagaaagg-aaaaaaccatgggaccc |
110 |
Q |
| |
|
||||| || ||| |||||| ||||||||||| |||||||||| | |||||||| ||||||| |||||||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
18556349 |
ataggtaccagcagaaacgtgaaatataagcgtaatgacacataaaattttagcgtggaaaaccttctcaatctgagaaaggcaaaaaaccacgggaccc |
18556448 |
T |
|
| Q |
111 |
ttgggcctcttaaaacttccactataatgataatgggaat---acaacttcacccttacgtggatctcactacaat |
183 |
Q |
| |
|
| | ||||||| |||||||||||||||||| |||| |||| ||||||||||||||| |||||||||| |||||| |
|
|
| T |
18556449 |
tcgagcctctt-aaacttccactataatgacaatgagaatacaacaacttcacccttaggtggatctcattacaat |
18556523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 57 - 154
Target Start/End: Complemental strand, 50603320 - 50603225
Alignment:
| Q |
57 |
aattttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggacccttgggcctcttaaaacttccactataatgataatgggaatacaa |
154 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| || |||||||||| || |||| | ||||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
50603320 |
aattttagcgtggaaaaccttctcaatgtgagtaa-gaaaaaaccacggaacccgtaggcctcttaaatc-tccactataataataatgggaatacaa |
50603225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 12 - 302
Target Start/End: Original strand, 342261 - 342555
Alignment:
| Q |
12 |
ataggcactagcggaaacgcgaaatataagcttaatgacacaaagaattttagtgtggaaatccttctcaatgtgagaaa-ggaaaaaaccatgggaccc |
110 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| ||||||||||||||||||||| ||| ||| |||||||||| ||||||| |||| |||||| |||| || |
|
|
| T |
342261 |
ataggcactagcagaaacgtgaaatataagcgtaatgacacaaagaattttagcgtgaaaaaccttctcaatatgagaaatggaagaaaccacgggatcc |
342360 |
T |
|
| Q |
111 |
ttgggcctcttaaaacttccactataatgataatgggaatacaac---ttcacccttacgtggatctcactacaatgtatctctcaatttgtaagaaaca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||| |||||||| |||||||||||||||||| |||| |
|
|
| T |
342361 |
ttgggcctcttaaaacttccactataatgataatgggaatacaacaatttcacccttaggtgtatctgactacaatatatctctcaatttgtaaggaaca |
342460 |
T |
|
| Q |
208 |
ctctcacgaattgggtctctatttctcccacaagaaaactctctatgaggatcacttttctcttgagcaaggctctcttcctcttttgctttttg |
302 |
Q |
| |
|
||||||| |||||| || ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||| |||| |
|
|
| T |
342461 |
ctctcacaaattggctcactatttctctcacaagaaaactctctatgaggatgacttttctcttgagcaaggctctctttctctcttgctctttg |
342555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 297
Target Start/End: Original strand, 9757256 - 9757548
Alignment:
| Q |
12 |
ataggcactagcggaaacgcgaaatataagcttaatgacacaaaga--attttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggacc |
109 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||||| |||||||||||||||||||| |||||||| |||||| |
|
|
| T |
9757256 |
ataggcactagcggaaacgtgaaatataagcgtaatgacacaaagagaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacc |
9757355 |
T |
|
| Q |
110 |
cttgggcctcttaaaa--cttccactataatgataatgggaatacaa---cttcacccttacgtggatctcactacaatgtatctctcaatttgtaagaa |
204 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| |||||||||||||||||| | |
|
|
| T |
9757356 |
cttgggcctcttaaaaaacttccactataatgataatgggaatacaacaacttcacccttaggtggatctcactataatatatctctcaatttgtaagga |
9757455 |
T |
|
| Q |
205 |
acactctcacgaattgggtctctatttctcccacaagaaaactctctatgaggatcacttttctcttgagcaaggctctcttcctcttttgct |
297 |
Q |
| |
|
|||||||||| |||||| || ||||||||| || ||||||||||||||||| ||| |||| ||||||||||||||||||||| |||| ||||| |
|
|
| T |
9757456 |
acactctcacaaattggctcactatttctctcaaaagaaaactctctatgaagatgacttctctcttgagcaaggctctctttctctcttgct |
9757548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 12 - 302
Target Start/End: Original strand, 42682881 - 42683171
Alignment:
| Q |
12 |
ataggcactagcggaaacgcgaaatataagcttaatgacacaaagaattttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggaccct |
111 |
Q |
| |
|
|||| |||||||| ||||| |||||||| | |||||||||| | |||| || ||||||| ||||||||||||||||||||||||| | | |||||||| |
|
|
| T |
42682881 |
atagacactagcgaaaacgtaaaatataaacgtaatgacacata--atttcagcgtggaaaaccttctcaatgtgagaaaggaaaaatc-acgggaccct |
42682977 |
T |
|
| Q |
112 |
tgggcctcttaaaacttccactataatgataatgggaatacaa---cttcacccttacgtggatctcactacaatgtatctctcaatttgtaagaaacac |
208 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
42682978 |
tggacctcttaaaacttccactataatgataatgggaatacaacaacttcacccttaggtgcatctcactacaatatatctctcaatttgtaaggaacac |
42683077 |
T |
|
| Q |
209 |
tctcacgaattgggtctctatttctcccacaagaaaactctctatgaggatcacttttctcttgagcaaggctctcttcctcttttgctttttg |
302 |
Q |
| |
|
||| || |||||| || ||||||||| |||||||||||||| | ||||||| | |||||||||||||||| |||||| |||| |||||||||| |
|
|
| T |
42683078 |
tcttacaaattggctcactatttctctcacaagaaaactctttgtgaggatgagttttctcttgagcaagactctctctctctcttgctttttg |
42683171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 37286932 - 37287223
Alignment:
| Q |
17 |
cactagcggaaacgcgaaatataagcttaatgacacaaagaa--ttttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggacccttgg |
114 |
Q |
| |
|
|||||||||||||| ||||||||| | |||||||| |||||| |||||| |||||| |||||||||||||| |||||||||| | | ||||||||| |
|
|
| T |
37286932 |
cactagcggaaacgtgaaatataaacgtaatgacagaaagaaaattttagcatggaaaaccttctcaatgtgaaaaaggaaaaatc-acgggacccttaa |
37287030 |
T |
|
| Q |
115 |
gcctcttaaaacttccactataatgataatgggaatacaac----ttcacccttacgtggatctcactacaatgtatctctcaatttgtaagaaacactc |
210 |
Q |
| |
|
|| ||||||| ||||||||||||| ||||| ||||||||| |||||||||| |||| ||||||||||| |||||||||||||||||| |||| | |
|
|
| T |
37287031 |
gcatcttaaa-cttccactataataataataagaatacaacaactttcacccttagatggagctcactacaatatatctctcaatttgtaaggaacatta |
37287129 |
T |
|
| Q |
211 |
tcacgaattgggtctctatttctcccacaagaaaactctctatgaggatcacttt--tctcttgagcaaggctctcttcctcttttgctttttg |
302 |
Q |
| |
|
||| ||| || || || |||||| || ||| ||| ||||||||| |||| ||| | | ||||||||| || |||| |||| |||||||||| |
|
|
| T |
37287130 |
acacaaatcggctcactgtttctctcagaaggaaattctctatgaacatcaattttatgttttgagcaagactttctttctctcttgctttttg |
37287223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 12 - 286
Target Start/End: Complemental strand, 2892 - 2613
Alignment:
| Q |
12 |
ataggcactagcggaaacgcgaaatataagcttaatgacacaaaga--attttagtgtggaaatccttctcaatgtgagaaagg-aaaaaaccatgggac |
108 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||||| |||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
2892 |
atagacactagcggaaacgtgaaatataagcgtaatgacacaaagagaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggac |
2793 |
T |
|
| Q |
109 |
ccttgggcctcttaaaacttccactataatgataatgggaatacaac---ttcacccttacgtggatctcactacaatgtatctctcaatttgtaagaaa |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
2792 |
ccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttcacccttaggtggatctcactacaatatatctctcaatttgtaaggaa |
2693 |
T |
|
| Q |
206 |
cactctcacgaattgggtctctatttctcccacaagaaaactctctatgaggatcacttttctcttgagcaaggctctctt |
286 |
Q |
| |
|
| ||||||| |||||| || ||||||||| |||||||||||||||||||||||| || |||||| |||||||||||||||| |
|
|
| T |
2692 |
cgctctcacaaattggctcactatttctctcacaagaaaactctctatgaggatgac-tttctcatgagcaaggctctctt |
2613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 12 - 302
Target Start/End: Complemental strand, 37038082 - 37037791
Alignment:
| Q |
12 |
ataggcactagcggaaacgcgaaatataagcttaatgacacaaagaattttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggaccct |
111 |
Q |
| |
|
||||||||||||| |||| ||||| | || ||| |||||| ||| |||||| | ||||| ||||||||||||||||||||| ||| ||| |||||||| |
|
|
| T |
37038082 |
ataggcactagcgaaaacctgaaatctttgcgtaaagacacatagatttttagcgaggaaaaccttctcaatgtgagaaaggagaaa-ccacgggaccct |
37037984 |
T |
|
| Q |
112 |
tgggcctcttaaaacttccactataatgataatgggaatacaac---ttcacccttacgtggatctcactacaatgtatctctcaatttgtaagaaacac |
208 |
Q |
| |
|
||||||||||||| ||| |||||||| ||||||| ||||||||| ||||| |||| |||||||||| |||||| | |||||||||| |||||||||| |
|
|
| T |
37037983 |
tgggcctcttaaa-ctttcactataacgataatgagaatacaacaacttcactcttaggtggatctcattacaatctgactctcaatttataagaaacac |
37037885 |
T |
|
| Q |
209 |
tctcacgaattgggtctctatttctcccacaagaaaactctctatgaggatcacttttctcttgagcaaggctctcttcctcttttgctttttg |
302 |
Q |
| |
|
|||||| |||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
37037884 |
tctcacaaattggctcactatttctctcacaagaaaactctctatgaggatcacttttctcttgagcaaggctctctttctctcttgctttttg |
37037791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 22981664 - 22981494
Alignment:
| Q |
14 |
aggcactagcggaaacgcgaaatataagcttaatgacacaaagaattttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggacccttg |
113 |
Q |
| |
|
||||||||||||||||| |||| |||||| |||||||||| |||||||||| ||||||| |||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
22981664 |
aggcactagcggaaacgtgaaaaataagcgtaatgacacagagaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttg |
22981565 |
T |
|
| Q |
114 |
ggcctcttaaaacttccactataatgataatgggaata---caacttcacccttacgtggatctcactaca |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||| |
|
|
| T |
22981564 |
ggcctcttaaaacttccactataatgataatgggaatacaacaacttcacccttaggtggatttcactaca |
22981494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 23806744 - 23806914
Alignment:
| Q |
14 |
aggcactagcggaaacgcgaaatataagcttaatgacacaaagaattttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggacccttg |
113 |
Q |
| |
|
||||||||||||||||| |||| |||||| |||||||||| |||||||||| ||||||| |||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
23806744 |
aggcactagcggaaacgtgaaaaataagcgtaatgacacagagaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttg |
23806843 |
T |
|
| Q |
114 |
ggcctcttaaaacttccactataatgataatgggaat---acaacttcacccttacgtggatctcactaca |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
23806844 |
ggcctcttaaaacttccactataatgataatgggaatacaacaacttcacccttaggtggatttcactaca |
23806914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 154
Target Start/End: Original strand, 31152009 - 31152105
Alignment:
| Q |
57 |
aattttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggacccttgggcctcttaaaacttccactataatgataatgggaatacaa |
154 |
Q |
| |
|
||||||| |||||||| ||||||||||||||| ||| ||||||||| |||| || | ||||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
31152009 |
aattttaatgtggaaaaccttctcaatgtgagtaagaaaaaaaccacgggatccgtaggcctcttaaatc-tccactataataataatgggaatacaa |
31152105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 300
Target Start/End: Complemental strand, 27642261 - 27641978
Alignment:
| Q |
21 |
agcggaaacgcgaaatataagcttaatgacacaaagaattttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggacccttgggcctct |
120 |
Q |
| |
|
|||||||||| ||||||||||| |||||| |||| ||||||| | ||| ||| |||||||||||||||||||||||||| || ||| ||| ||| |||| |
|
|
| T |
27642261 |
agcggaaacgtgaaatataagcgtaatgatacaaggaattttggcgtgtaaaaccttctcaatgtgagaaaggaaaaaatcacggggtcctcgggtctct |
27642162 |
T |
|
| Q |
121 |
taaaacttccactataatgataatgggaata---caacttcacccttacgtggatctcactacaatgtatctctcaatttgtaagaaacactctcacgaa |
217 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| |||||||| | ||| ||||||||||||||||| |||||||| ||||||||| ||||||||||| || |
|
|
| T |
27642161 |
taaa-cttccactataataataatgggaataaaacaacttcatctttaagtggatctcactacaatatatctctctatttgtaaggaacactctcacaaa |
27642063 |
T |
|
| Q |
218 |
ttgggtctctatttctcccacaagaaaactctctatgaggatcacttttctc--ttgagcaaggctctcttcctcttttgctttt |
300 |
Q |
| |
|
||| | ||||||||| || ||| ||||| | || |||||||||||||||| ||||||||| ||||||| |||| |||||||| |
|
|
| T |
27642062 |
ttgacttcctatttctctcaaaaggaaactttttacgaggatcacttttctcttttgagcaagactctctttctctcttgctttt |
27641978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 57 - 271
Target Start/End: Original strand, 26579 - 26795
Alignment:
| Q |
57 |
aattttagtgtggaaatccttctcaatgtgagaaaggaaaaaaccatgggacccttgggcctcttaaaacttccactataatgataatgggaatacaact |
156 |
Q |
| |
|
|||||||| ||||||| |||| |||||||||| ||||||||| | | ||||||||||||||||||||| |||||||| ||||||||| | |||||||||| |
|
|
| T |
26579 |
aattttagggtggaaaaccttttcaatgtgagtaaggaaaaa-ctacgggacccttgggcctcttaaa-cttccactctaatgataacgagaatacaact |
26676 |
T |
|
| Q |
157 |
tc---acccttacgtggatctcactacaatgtatctctcaatttgtaagaaacactctcacgaattgggtctctatttctcccacaagaaaactct--ct |
251 |
Q |
| |
|
| ||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| |||||| || |||||| || ||||| |||||||| || |
|
|
| T |
26677 |
actccacccttaggtggatctcactacaatttatctctcaatttgtaaggaacactctcacaaattggctcactattt-tctcacaaaaaaactctagct |
26775 |
T |
|
| Q |
252 |
atgaggatcacttttctctt |
271 |
Q |
| |
|
||| ||||||||||| |||| |
|
|
| T |
26776 |
atgcggatcacttttatctt |
26795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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