View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11952_high_22 (Length: 284)

Name: NF11952_high_22
Description: NF11952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11952_high_22
NF11952_high_22
[»] chr8 (5 HSPs)
chr8 (1-213)||(1416025-1416237)
chr8 (127-190)||(2001780-2001847)
chr8 (122-190)||(29314127-29314199)
chr8 (123-190)||(33888977-33889048)
chr8 (123-190)||(41322658-41322729)
[»] chr5 (6 HSPs)
chr5 (123-190)||(8692637-8692708)
chr5 (123-190)||(32891303-32891374)
chr5 (123-190)||(34286722-34286793)
chr5 (123-188)||(37093912-37093981)
chr5 (123-190)||(4391844-4391915)
chr5 (123-190)||(5481481-5481552)
[»] chr4 (6 HSPs)
chr4 (123-192)||(54358241-54358314)
chr4 (123-190)||(17847541-17847612)
chr4 (123-190)||(18375390-18375461)
chr4 (127-190)||(41633349-41633416)
chr4 (123-189)||(24683205-24683275)
chr4 (123-189)||(37674000-37674070)
[»] chr3 (7 HSPs)
chr3 (123-188)||(45166355-45166424)
chr3 (127-190)||(23642978-23643045)
chr3 (123-190)||(50612873-50612944)
chr3 (123-190)||(51297022-51297095)
chr3 (126-190)||(39145383-39145451)
chr3 (124-190)||(31788435-31788505)
chr3 (123-159)||(38176423-38176459)
[»] chr1 (5 HSPs)
chr1 (122-187)||(41647355-41647424)
chr1 (123-190)||(31032696-31032767)
chr1 (124-181)||(1270301-1270362)
chr1 (123-189)||(47550920-47550990)
chr1 (123-190)||(45010328-45010399)
[»] chr2 (6 HSPs)
chr2 (123-186)||(41464902-41464969)
chr2 (123-190)||(45093148-45093219)
chr2 (123-199)||(19899048-19899128)
chr2 (122-190)||(28716316-28716388)
chr2 (123-190)||(13686122-13686193)
chr2 (158-190)||(16058375-16058407)
[»] chr7 (1 HSPs)
chr7 (123-160)||(27425786-27425823)


Alignment Details
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 1416237 - 1416025
Alignment:
Q  1 ccaaaaaagacattctaccttcatttctccgggtataatgcctttgatgtagccatgtacttcattataatatggatttaacattttcacctgaaacttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1416237 ccaaaaaagacattctaccttcatttctccgggtataatgcctttgatgtagccatgtacttcattataatatggatttaacattttcacctgaaac-tt 1416139  T
Q  101 aggtttggctcaaaaataggaaatgcaattaaaatttgtcaactgtgtcttgaaaaattgatgctattttt-tagagaaataacattttccgttttcaaa 199  Q
    ||||||||||||||||||| |||| |||||||||||||||| | | |||||||||| |||||||||||||| ||||||||||||||||||| ||||||||    
T  1416138 aggtttggctcaaaaatagaaaattcaattaaaatttgtcaccagcgtcttgaaaatttgatgctatttttctagagaaataacattttccattttcaaa 1416039  T
Q  200 tactacaccaaata 213  Q
    ||||||||||||||    
T  1416038 tactacaccaaata 1416025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 2001780 - 2001847
Alignment:
Q  127 aattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattttcc 190  Q
    |||||||| ||| || |||||||||||||||   |||||||||||||| |||||||||||||||||||    
T  2001780 aattaaaacttggcagctgtgtcttgaaaaaaatttgatgctatttttctagagaaataacattttcc 2001847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 29314127 - 29314199
Alignment:
Q  122 aatgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgcta-ttttttagagaaataacattttcc 190  Q
    ||||||||||||| ||  ||||||||||||||||||   ||||| ||| ||||||||||||||| ||||||||    
T  29314127 aatgcaattaaaacttaccaactgtgtcttgaaaaattcttgatactatttttttagagaaatagcattttcc 29314199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 33888977 - 33889048
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattttcc 190  Q
    |||||||||||| ||||||  ||| ||||||||||   |||||||||||||| |||||||||| ||||||||    
T  33888977 atgcaattaaaacttgtcagttgtttcttgaaaaattcttgatgctatttttctagagaaatagcattttcc 33889048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 41322658 - 41322729
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattttcc 190  Q
    |||||||||||| |||  |||| ||||||||||||   |||||||||||||| |||||||||| ||||||||    
T  41322658 atgcaattaaaacttgctaactatgtcttgaaaaattcttgatgctatttttctagagaaatagcattttcc 41322729  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 8692637 - 8692708
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgcta-ttttttagagaaataacattttcc 190  Q
    ||||||||||||||||||| ||||||||||||| |   ||||||||| ||||||||||||||||||||||||    
T  8692637 atgcaattaaaatttgtcagctgtgtcttgaaagattcttgatgctatttttttagagaaataacattttcc 8692708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 32891303 - 32891374
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattttcc 190  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||| |||| ||||| ||||||||    
T  32891303 atgcaattaaaatttgtcaactgtgtcttgaaaaattgttgatgctatttttctagataaatagcattttcc 32891374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 34286722 - 34286793
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattttcc 190  Q
    |||||||||||||||||||  ||||||||||||||   |||||||||||||| |||||||||||||||||||    
T  34286722 atgcaattaaaatttgtcagttgtgtcttgaaaaaattttgatgctatttttctagagaaataacattttcc 34286793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 37093981 - 37093912
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacatttt 188  Q
    |||||||||||| ||||||||||||||||||||||   |||||||||||||| |||| ||||||||||||    
T  37093981 atgcaattaaaacttgtcaactgtgtcttgaaaaattcttgatgctatttttctagaaaaataacatttt 37093912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 4391915 - 4391844
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattttcc 190  Q
    |||||||||||| ||| || |||||||||||||||   |||||||||||||| |||||||||  ||||||||    
T  4391915 atgcaattaaaacttgccagctgtgtcttgaaaaattcttgatgctatttttctagagaaattgcattttcc 4391844  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 5481481 - 5481552
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattttcc 190  Q
    ||||| |||||||||  |||||||||||| |||||   |||||||||||||| ||||||||||| |||||||    
T  5481481 atgcagttaaaatttaccaactgtgtcttaaaaaattcttgatgctatttttctagagaaataatattttcc 5481552  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 54358241 - 54358314
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattttccgt 192  Q
    |||||||||||| ||| ||||| ||||||||||||   |||||||||||||| |||||||||||||||||||||    
T  54358241 atgcaattaaaacttgccaactatgtcttgaaaaattcttgatgctatttttctagagaaataacattttccgt 54358314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 17847612 - 17847541
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattttcc 190  Q
    |||||||||||| ||| ||||||||||||||||||   ||||||||||||||  ||||||||||||||||||    
T  17847612 atgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttcgagagaaataacattttcc 17847541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 18375461 - 18375390
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattttcc 190  Q
    |||||||||||| ||| ||  ||||||||||||||   |||||||||||||| |||||||||||||||||||    
T  18375461 atgcaattaaaacttgccagttgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 18375390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 41633349 - 41633416
Alignment:
Q  127 aattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattttcc 190  Q
    ||||||||||||||| || ||||||||||||   |||||||||||||| |||||||||| ||||||||    
T  41633349 aattaaaatttgtcagctttgtcttgaaaaattcttgatgctatttttctagagaaatagcattttcc 41633416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 24683205 - 24683275
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattttc 189  Q
    |||||||||||| || |||| ||||||||||||||   ||||| |||||||| || |||||||||||||||    
T  24683205 atgcaattaaaacttatcaagtgtgtcttgaaaaattcttgatactatttttctaaagaaataacattttc 24683275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 37674070 - 37674000
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattttc 189  Q
    |||||||||||| ||||||   |||||||||||||   |||||||||||||| |||||||||| |||||||    
T  37674070 atgcaattaaaacttgtcacacgtgtcttgaaaaattcttgatgctatttttctagagaaatatcattttc 37674000  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 45166355 - 45166424
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacatttt 188  Q
    |||||||||||||||| |||||| |||||||||||   |||||||||||||| |||||||||||||||||    
T  45166355 atgcaattaaaatttgccaactgcgtcttgaaaaattcttgatgctatttttctagagaaataacatttt 45166424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 23643045 - 23642978
Alignment:
Q  127 aattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattttcc 190  Q
    ||||||||||||||| |||||||||||||||   |||||||||||||| |||||||||| ||||||||    
T  23643045 aattaaaatttgtcagctgtgtcttgaaaaattcttgatgctatttttctagagaaatagcattttcc 23642978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 50612944 - 50612873
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattttcc 190  Q
    |||||||||||| |||||| |||||| ||||||||   |||||||| ||||| |||||||||||||||||||    
T  50612944 atgcaattaaaacttgtcagctgtgtattgaaaaattcttgatgctgtttttatagagaaataacattttcc 50612873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 51297095 - 51297022
Alignment:
Q  123 atgcaattaaaatttgtcaact-gtgtcttgaaaaa---ttgatgctatttttt--agagaaataacattttcc 190  Q
    ||||||||||||||| |||||| | |||||||||||   |||||||||||||||  ||||||||||||||||||    
T  51297095 atgcaattaaaatttatcaacttgcgtcttgaaaaaattttgatgctattttttttagagaaataacattttcc 51297022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 39145383 - 39145451
Alignment:
Q  126 caattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattttcc 190  Q
    ||||||||| ||| |||||||||||||| |||   |||||||||||||| |||||||||| ||||||||    
T  39145383 caattaaaacttgacaactgtgtcttgacaaattcttgatgctatttttctagagaaatagcattttcc 39145451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 31788435 - 31788505
Alignment:
Q  124 tgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattttcc 190  Q
    |||| |||||| ||||||| ||||||||||||||   |||| | ||||||| |||||||||||||||||||    
T  31788435 tgcagttaaaacttgtcaattgtgtcttgaaaaattcttgaagttatttttatagagaaataacattttcc 31788505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 38176459 - 38176423
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaatt 159  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  38176459 atgcaattaaaacttgccaactgtgtcttgaaaaatt 38176423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 41647355 - 41647424
Alignment:
Q  122 aatgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattt 187  Q
    ||||||||||||| ||||||||||||||||||||||   |||||||||||||| |||||||||| |||||    
T  41647355 aatgcaattaaaacttgtcaactgtgtcttgaaaaattcttgatgctatttttctagagaaatagcattt 41647424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 31032767 - 31032696
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattttcc 190  Q
    |||||||||||| ||||||||||| ||||||||||   |||||||||||||| |||| ||||||||||||||    
T  31032767 atgcaattaaaacttgtcaactgtatcttgaaaaattcttgatgctatttttctagaaaaataacattttcc 31032696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 1270301 - 1270362
Alignment:
Q  124 tgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaata 181  Q
    ||||||||||| ||||||||||||||||||||||   |||||||||||||| ||||||||||    
T  1270301 tgcaattaaaacttgtcaactgtgtcttgaaaaatttttgatgctatttttctagagaaata 1270362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 47550920 - 47550990
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattttc 189  Q
    |||||||||||| ||| || |||| ||||||||||   |||||||||||||| ||||||||||||||||||    
T  47550920 atgcaattaaaacttgccagctgtttcttgaaaaattcttgatgctatttttctagagaaataacattttc 47550990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 45010328 - 45010399
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattttcc 190  Q
    |||||||||||||||||||  ||||| ||||||||   || ||||||||||| |||||||||||||| ||||    
T  45010328 atgcaattaaaatttgtcagatgtgttttgaaaaattctttatgctatttttctagagaaataacatcttcc 45010399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 41464969 - 41464902
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacatt 186  Q
    |||||||||||| ||||||||||||||||||||||   |||||| ||||||| |||||||||||||||    
T  41464969 atgcaattaaaacttgtcaactgtgtcttgaaaaattcttgatgttatttttctagagaaataacatt 41464902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 45093219 - 45093148
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattttcc 190  Q
    |||||||||||||||  ||||||| |||| |||||   |||||||||||||| |||||||||||||||||||    
T  45093219 atgcaattaaaatttcccaactgtatcttaaaaaattcttgatgctatttttctagagaaataacattttcc 45093148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 19899048 - 19899128
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaat---tgatgctattttt-tagagaaataacattttccgttttcaaa 199  Q
    |||||||||||| ||| ||  |||||||||||||||   ||||||||||||| |||||||||| ||||||| || ||||||    
T  19899048 atgcaattaaaacttgccagttgtgtcttgaaaaattcgtgatgctatttttctagagaaatagcattttctgtattcaaa 19899128  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 28716388 - 28716316
Alignment:
Q  122 aatgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattttcc 190  Q
    ||||||||||||| ||| ||  ||||||||||||||   |||||||||||||| |||| ||||||||||||||    
T  28716388 aatgcaattaaaacttgccagttgtgtcttgaaaaattcttgatgctatttttctagaaaaataacattttcc 28716316  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 13686122 - 13686193
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaa---ttgatgctattttt-tagagaaataacattttcc 190  Q
    |||||||||||| ||| ||| |||||||| |||||   |||||||||||||| |||||||||| ||||||||    
T  13686122 atgcaattaaaacttgccaattgtgtcttaaaaaattcttgatgctatttttctagagaaatagcattttcc 13686193  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 16058407 - 16058375
Alignment:
Q  158 ttgatgctattttttagagaaataacattttcc 190  Q
    ||||||||||||||||||||||||| |||||||    
T  16058407 ttgatgctattttttagagaaataagattttcc 16058375  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 27425823 - 27425786
Alignment:
Q  123 atgcaattaaaatttgtcaactgtgtcttgaaaaattg 160  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  27425823 atgcaattaaaacttgccaactgtgtcttgaaaaattg 27425786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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