View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11952_high_23 (Length: 278)
Name: NF11952_high_23
Description: NF11952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11952_high_23 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 44903631 - 44903370
Alignment:
| Q |
18 |
aattcagagtggtaggaggaacaggttcgtttgcatttgttcatggtgttgcagtttttactcaaacagatgaacagacaagtgatgaagctataactta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44903631 |
aattcagagtggtaggaggaacaggttcgtttgcatttgctcatggtgttgcagtttttactcaaacagatgaacagacaagtgatgaagctataactta |
44903532 |
T |
|
| Q |
118 |
tcatgtaaaacttcagcttgaattcccgaatcattcaacaaagttactatgaatgatgaagcaacgtttttagt-ttttacttcatttttgcttgatgat |
216 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||| ||| |||| |
|
|
| T |
44903531 |
tcatgtaaaacttcagcttgaattcccaaatcattcaacaaagttactatgaatgatgaagcaaagtttttagttttttaattcatttttggttgctgat |
44903432 |
T |
|
| Q |
217 |
tctttcttatcatatcagaagagttttaaaaattctagtaaaatacaagattgaataataat |
278 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| |
|
|
| T |
44903431 |
tctttcttatcatatcagaagagtttttaaaattctactaacatacaagattgaataataat |
44903370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 44917103 - 44916848
Alignment:
| Q |
18 |
aattcagagtggtaggaggaacaggttcgtttgcatttgttcatggtgttgcagtttttactcaaacagatgaacagacaagtgatgaagctataactta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44917103 |
aattcagagtggtaggaggaacaggttcgtttgcatttgctcatggtgttgcagtttttactcaaacagatgaacagacaagtgatgaagctataactta |
44917004 |
T |
|
| Q |
118 |
tcatgtaaaacttcagcttgaattcccgaatcattcaacaaagttactatgaatgatgaagcaacgtttttagt-ttttacttcatttttgcttgatgat |
216 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||| ||| |||| |
|
|
| T |
44917003 |
tcatgtaaaacttcagcttgaattcccaaatcattcaacaaagttactatgaatgatgaagcaaagtttttagttttttaattcatttttggttgctgat |
44916904 |
T |
|
| Q |
217 |
tctttcttatcatatcagaagagttttaaaaattctagtaaaatacaagattgaat |
272 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||| |
|
|
| T |
44916903 |
tctttcttatcatatcagaagagtttttaaaattctactaacatacaagattgaat |
44916848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 22195981 - 22196027
Alignment:
| Q |
221 |
tcttatcatatcagaagagttttaaaaattctagtaaaatacaagat |
267 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||| || |||||| |
|
|
| T |
22195981 |
tcttatcatatcagaagagtttttaaaattctactaacattcaagat |
22196027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University