View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11952_high_27 (Length: 229)
Name: NF11952_high_27
Description: NF11952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11952_high_27 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 45957010 - 45957193
Alignment:
| Q |
7 |
atttatacgtagctgatgcttattatggtcttgttaaggttagtccggatggagcaaatgtaactcaattagttggacctgcacaagccaattctactaa |
106 |
Q |
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|||| ||||||||||||||||||| || ||||||||||||||||| ||||||| |||||||| || |||||||||||||| ||||| |||||||| | |
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| T |
45957010 |
atttgtacgtagctgatgcttatttggggcttgttaaggttagtcccgatggagggaatgtaacacagttagttggacctgcccaagcaaattctacaat |
45957109 |
T |
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| Q |
107 |
gtttgctgatggtttggatgtagattccgacactggaatcgtttattttacggaagctagcaccaatttccagctcaagtaagc |
190 |
Q |
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| T |
45957110 |
gtttgctgatggtttggatgtagatcctgacacaggaatcgtttattttaccgtagctagcactaacttccaactcaagtaagc |
45957193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 7 - 189
Target Start/End: Original strand, 45963797 - 45963979
Alignment:
| Q |
7 |
atttatacgtagctgatgcttattatggtcttgttaaggttagtccggatggagcaaatgtaactcaattagttggacctgcacaagccaattctactaa |
106 |
Q |
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| T |
45963797 |
atttatatgtagctgatgcttattttggacttgttaaggttggccccaatggtgggaatgcaactcaattagttggaccgacacaagccaattctactat |
45963896 |
T |
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| Q |
107 |
gtttgctgatggtttggatgtagattccgacactggaatcgtttattttacggaagctagcaccaatttccagctcaagtaag |
189 |
Q |
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| T |
45963897 |
gtttgccgatggtttggatgtagatccggacactggaatcgtttattttaccatagctagcactaattacaagctcaagtaag |
45963979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 45978847 - 45979060
Alignment:
| Q |
7 |
atttatacgtagctgatgcttattatggtcttgttaaggttagtccggatggagcaaatgtaactcaattagttggacctgcacaagccaattctactaa |
106 |
Q |
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| T |
45978847 |
atttatatgtagctgatgcttattttggacttgttaaggttggccccaatggtgggaatgcaactcaattagttggaccgacacaagccaattctactgt |
45978946 |
T |
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| Q |
107 |
gtttgctgatggtttggatgtagattccgacactggaatcgtttattttacggaagctagcaccaatttccagctcaagtaagcgtggttttttctgctt |
206 |
Q |
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| T |
45978947 |
ctctgctgatggtttggatgtagacccaaacactggaatcatttattttaccatagctagcactaaattccagctcaagtaagcatagttttctctactt |
45979046 |
T |
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| Q |
207 |
acaatgtaatcttt |
220 |
Q |
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| T |
45979047 |
acaatattatcttt |
45979060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 211
Target Start/End: Original strand, 45972736 - 45972875
Alignment:
| Q |
72 |
caattagttggacctgcacaagccaattctactaagtttgctgatggtttggatgtagattccgacactggaatcgtttattttacggaagctagcacca |
171 |
Q |
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| T |
45972736 |
caattagttggacctgcacaatctaactctactgtgtttgctaatggtttggatgtagactcaaacactggaatcgtttattttaccatagctagcacta |
45972835 |
T |
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| Q |
172 |
atttccagctcaagtaagcgtggttttttctgcttacaat |
211 |
Q |
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| T |
45972836 |
aattccagcccaagtaagcatagttttctctacttacaat |
45972875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 45871752 - 45871680
Alignment:
| Q |
118 |
gtttggatgtagattccgacactggaatcgtttattttacggaagctagcaccaatttccagctcaagtaagc |
190 |
Q |
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| T |
45871752 |
gtttggatgtagacccaaacactggaatcgtttattttaccatagctagcgctaaattccagctcaagtaagc |
45871680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 45871787 - 45871755
Alignment:
| Q |
72 |
caattagttggacctgcacaagccaattctact |
104 |
Q |
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| T |
45871787 |
caattagttggacctgcacaagtcaattctact |
45871755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 63 - 199
Target Start/End: Complemental strand, 299337 - 299201
Alignment:
| Q |
63 |
aatgtaactcaattagttggacctgcacaagccaattctactaagtttgctgatggtttggatgtagattccgacactggaatcgtttattttacggaag |
162 |
Q |
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| T |
299337 |
aatgtaacccaattagttggacctgcacaaggcaattctactatgtttgctgatggtttggatgtagatcctgacactggaatcgtttattttaccgtag |
299238 |
T |
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| Q |
163 |
ctagcaccaatttccagctcaagtaagcgtggttttt |
199 |
Q |
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| T |
299237 |
ctagcactaacttccaactcaagtaagcattgttttt |
299201 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 24143135 - 24143090
Alignment:
| Q |
122 |
ggatgtagattccgacactggaatcgtttattttacggaagctagc |
167 |
Q |
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| T |
24143135 |
ggatgtagatcctaacactggaatcgtttattttacggaagctagc |
24143090 |
T |
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