View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11952_high_5 (Length: 601)
Name: NF11952_high_5
Description: NF11952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11952_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 253 - 585
Target Start/End: Original strand, 27175161 - 27175484
Alignment:
| Q |
253 |
atatccatggagcatcaagaagaagatcaactttttgttgcaacatgttttgctacaagcaatagtttgtgtgactcatggttaattgacagcggatgca |
352 |
Q |
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| T |
27175161 |
atatccatggagcatcaagaagaagatcaactttttgttgcaacatgttttgctacaagcaatagtttgtg--actcgtggttacttgacagcagatgca |
27175258 |
T |
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| Q |
353 |
caaatcatatgaccaatgatcataagctctttaaagaggttgaaaa-aatcgttgtttcgaaagtaaaaactgaaaatggtgatttcaactcagtcaagg |
451 |
Q |
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| T |
27175259 |
caaatcacatgaccaatgatcataagctctttaaagaggttgaaaaaaatcgttgtttcgaaagtaaaaactgaaaatggtgatttcaactcagtcaagg |
27175358 |
T |
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| Q |
452 |
gaaattggactgttgctattg-aagcttatctggtatatatgtgatatatttatgaatgttttattttttcttgacttgacattgattaaaatttgtcta |
550 |
Q |
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| T |
27175359 |
gaaattggactgttgctattgaaagcttatctgg----tatgtgatatatttatgaatgttttatttgtt-----cttgacattgatcaaaatttgtcta |
27175449 |
T |
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| Q |
551 |
gtgttccacaacttattgaaaagggttgcaaaaac |
585 |
Q |
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| T |
27175450 |
gtgttccacaacttattgaaaagggcttcaaaaac |
27175484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 27175115 - 27175160
Alignment:
| Q |
17 |
agaatgatgagaggagaaa-tgtccataaaatgttctttgtatgtg |
61 |
Q |
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| T |
27175115 |
agaatgatgagaggagaaaatgtccataaaatgttcattgtatgtg |
27175160 |
T |
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