View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11952_low_11 (Length: 476)
Name: NF11952_low_11
Description: NF11952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11952_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 26795643 - 26796085
Alignment:
| Q |
1 |
caaggattgagaagctatgattgctgccataacagcaacaacaaacattggccagtataaagcctctgcaaagtttgaaaccatcattagtacgaaaatt |
100 |
Q |
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| T |
26795643 |
caaggattgagaagctatgattgctgccataacagcaacaacaaacattggccaatataaagcatctgcaaagtttgaaaccatcattactacgaaaatt |
26795742 |
T |
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| Q |
101 |
ggtcataacacgcacacatctacactgataataattttaaaacaccaaacaagtcattaatctaaagtgtcgttgctacatatatatatagcatcgatgt |
200 |
Q |
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| T |
26795743 |
ggtcataacacgcacacatctacactgataataattttaaaacaccaaacaagtcattaatctaaagtgttgttgctacatat----atagcatcgatgt |
26795838 |
T |
|
| Q |
201 |
taatgatgtgataaaatgcattacgtggtacggacttatagaaagcatcagtagcagcgtcattgtgtttgcgaagataagaggattgtccagtgtaggc |
300 |
Q |
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| T |
26795839 |
taatgatgtgataaaatgcattacgtggtacggacttatagaaagcatcagtagcagcgtcattgtgtttgcgaagataagaggattgtccagtgtaggc |
26795938 |
T |
|
| Q |
301 |
aagtatgagagcagggtaaacaagaccgcacgtgcttatctgtatagaccgcactgtgaaatgtccaacatcagcaaatagtgcttctgctcctgcattt |
400 |
Q |
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| T |
26795939 |
aagtatgagagcagggtaaacaagaccgcacgtgcttatctgtatagaccgcactgtgaaatgtccaacatcagcaaatagtgcttctgctcctgcattt |
26796038 |
T |
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| Q |
401 |
tagtatatattttatgatacaatgacaagtttagatacacattaattaat |
450 |
Q |
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| T |
26796039 |
---tatatattttatgatacgatgacaagtttagatacacattaattaat |
26796085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 397
Target Start/End: Original strand, 44179754 - 44179816
Alignment:
| Q |
335 |
cttatctgtatagaccgcactgtgaaatgtccaacatcagcaaatagtgcttctgctcctgca |
397 |
Q |
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| T |
44179754 |
cttatctgtatagaccgaaccgtaaagtgtccaacatcagcaaatagtgcttcagttcctgca |
44179816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 44179374 - 44179426
Alignment:
| Q |
7 |
ttgagaagctatgattgctgccataacagcaacaacaaacattggccagtata |
59 |
Q |
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| T |
44179374 |
ttgagaagcaataattgctgccagaacagcaatcacaaacattggccaatata |
44179426 |
T |
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