View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11952_low_15 (Length: 410)

Name: NF11952_low_15
Description: NF11952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11952_low_15
NF11952_low_15
[»] chr1 (2 HSPs)
chr1 (4-394)||(5757174-5757582)
chr1 (4-394)||(6073530-6073939)


Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 4 - 394
Target Start/End: Original strand, 5757174 - 5757582
Alignment:
Q  4 aatgcaattaccccgcctactaacaataaatatttcgcacggcaagcttttagttttccagaacaatgcagcatctcaaatcaatctgttatcttaccct 103  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5757174 aatgcaattaccccgcctactaacaatgaatatttcgcacggcaagcttttagttttccagaacaatgcagcatctcaaatcaatctgttatcttaccct 5757273  T
Q  104 cggcgaccaatatagcttcatttgatacct------------------ctattaaggttcatgttggatactttaacacttcataatacataataatatt 185  Q
    || |||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5757274 cgtcgaccaatatagcttcatttgatacctcatcaagttttcaaacctctattaaggttcatgttggatactttaacacttcataatacataataatatt 5757373  T
Q  186 tattacttcattcattagtttatttaaattaacaactcttatttgtgcaatgtgaaggataatttctgcaacaacatgccacaactgattttggatacaa 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5757374 tattacttcattcattagtttatttaaattaacaactcttatttgtgcaatgtgaaggataatttctgcaacaacatgccacaactgattttggatacaa 5757473  T
Q  286 caaggattggaaaaactccttcttcagatatttcttaaacagcttgaattcatcagagacagaaatccattttgtaaaagggtagctttttgttcagaca 385  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5757474 caaggattggaaaaactccttcttcagatgtttcttaaacagcttgaattcatcagagacagaaatccattttgtaaaagggtagctttttgttcagaca 5757573  T
Q  386 tcatgatct 394  Q
    |||||||||    
T  5757574 tcatgatct 5757582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 4 - 394
Target Start/End: Complemental strand, 6073939 - 6073530
Alignment:
Q  4 aatgcaattaccccgcctactaacaataaatatttcgcacggcaagcttttagttttccagaacaatgcagcatctcaaatcaatctgttatcttaccct 103  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6073939 aatgcaattaccccgcctactaacaatgaatatttcgcacggcaagcttttagttttccagaacaatgcagcatctcaaatcaatctgttatcttaccct 6073840  T
Q  104 cggcgaccaatatagcttcatttgatacctc------------------tattaaggttcatgttggatactttaacacttcataatacataataatatt 185  Q
    |||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6073839 cggcgaccaatatagcttcatttgatacctcatcaagttttcaaacctctattaaggttcatgttggatactttaacacttcataatacataataatatt 6073740  T
Q  186 tattacttcattcattagtttatttaaattaacaactcttatttgtgcaatgtgaaggataatttctgcaacaacatgccacaactga-ttttggataca 284  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6073739 tattacttcatccattagtttatttaaattaacaactcttatttgtgcaatgtgaaggataatttctgcaacaacatgccacaactgatttttggataca 6073640  T
Q  285 acaaggattggaaaaactccttcttcagatatttcttaaacagcttgaattcatcagagacagaaatccattttgtaaaagggtagctttttgttcagac 384  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6073639 acaaggattggaaaaactccttcttcagatgtttcttaaacagcttgaattcatcagagacagaaatccattttgtaaaagggtagctttttgttcagac 6073540  T
Q  385 atcatgatct 394  Q
    ||||||||||    
T  6073539 atcatgatct 6073530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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