View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11952_low_17 (Length: 368)
Name: NF11952_low_17
Description: NF11952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11952_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 37 - 349
Target Start/End: Complemental strand, 48109575 - 48109265
Alignment:
| Q |
37 |
atggccattatttgcttttttatctacaacaacttcaaatctacgtgacacaattgtgtcatttatttacgtagatgcgatctgcttcagacaccacttg |
136 |
Q |
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| T |
48109575 |
atggccattatttgcttttttatctacgacaacttcaaatctacgtgacacaactgtgtcatttatttacgtagatgcgatctgcttcagacaccacttg |
48109476 |
T |
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| Q |
137 |
aattgaagagttcaattttcatgcattttgtgcaaaattcattacattgattattgatattatagtacattagaatttgatttgacatattaattaacaa |
236 |
Q |
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| T |
48109475 |
aattgaagagttcaattttcatgcattttgtgcaaaattcattacattgattattgatattatagtacattagaatttgatttgacatattaattaagaa |
48109376 |
T |
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| Q |
237 |
tatcaatcgattattagcaaaacaacgaaaaatctaagaaatgatttcacgggacatcattggagtctccaatccatatctgacaatattgctcaaagca |
336 |
Q |
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| T |
48109375 |
tatcaatcgattattagc--aacaacgaaaaatctaagaaatgatttcacgggacatcattggagtctccaatccatatctgacattattgctcaaagca |
48109278 |
T |
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| Q |
337 |
ttatattatgtct |
349 |
Q |
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| T |
48109277 |
ttatagtatgtct |
48109265 |
T |
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