View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11952_low_26 (Length: 239)
Name: NF11952_low_26
Description: NF11952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11952_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 80 - 230
Target Start/End: Complemental strand, 6540064 - 6539914
Alignment:
| Q |
80 |
tcccaaatcatgaaatcagacgataagaaaaataaccaaaacctgatgatcaaaataaaatagtgaatcagatgataagccgaataatccttgctactga |
179 |
Q |
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| T |
6540064 |
tcccaaatcatgaaatcagacgataagaaaaataaccaaaacctgatgatcaaaataaaatagtgaatcagatgataagccgaataatccttgctactga |
6539965 |
T |
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| Q |
180 |
tgttaatcaagtaaacagctctggctagctgagtagtggtttcttcatctc |
230 |
Q |
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| T |
6539964 |
tgttaatcaagtaaacagctctagctagctgagtagtggtttcttcatctc |
6539914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 82 - 231
Target Start/End: Original strand, 7159332 - 7159485
Alignment:
| Q |
82 |
ccaaatcatgaaatcagacgataagaaaaataaccaaaacctgatgatcaaaataaaatagtg----aatcagatgataagccgaataatccttgctact |
177 |
Q |
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| T |
7159332 |
ccaaatcttgaaatcagacgaaaagacaaacaaccaaaacctgatgatcaaaataatatagtgagtgaatcagaagataaaccgaacaatcattgctact |
7159431 |
T |
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| Q |
178 |
gatgttaatcaagtaaacagctctggctagctgagtagtggtttcttcatctct |
231 |
Q |
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| T |
7159432 |
gatgttagtcaagtaaacagctctggtcagcagagttgttgtttcttcatctct |
7159485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 7563493 - 7563553
Alignment:
| Q |
95 |
tcagacgataagaaaaataaccaaaacctgatgatcaaaataaaatagtgaatcagatgataa |
157 |
Q |
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| T |
7563493 |
tcagacaataagaaaaacaacctaaacctgatgatcaaaat--aatagtgaatcagatgataa |
7563553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 48 - 227
Target Start/End: Complemental strand, 24797868 - 24797689
Alignment:
| Q |
48 |
cataaattagcattaagcataagtaaactatctcccaaatcatgaaatcagacgataagaaaaataaccaaaacctgatgatcaaaataaaatagtgaat |
147 |
Q |
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| T |
24797868 |
cataaattagcattaagcatgaggaaactatgtcccaaattatgaactcagacgataagaaaaacaaccaacaccggatgattgatataatatagcgaat |
24797769 |
T |
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| Q |
148 |
cagatgataagccgaataatccttgctactgatgttaatcaagtaaacagctctggctagctgagtagtggtttcttcat |
227 |
Q |
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| T |
24797768 |
cagatgataaactgaataatcgtttctaccggtgttaatcaagtaaacagctctgaccagcagagttgtggtttcttcat |
24797689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 152
Target Start/End: Complemental strand, 24725711 - 24725608
Alignment:
| Q |
48 |
cataaattagcattaagcataagtaaactatctcccaaatcatgaaatcagacgataagaaaaataaccaaaacctgatgatcaaaataaaatagtgaat |
147 |
Q |
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| T |
24725711 |
cataaatttgcattaagcatgag-aaactatgttcgaaattatgaactcagatgataagaaaaacaaccaacaccggatgattgaaataatatagtgaac |
24725613 |
T |
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| Q |
148 |
cagat |
152 |
Q |
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||||| |
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| T |
24725612 |
cagat |
24725608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 3011860 - 3011941
Alignment:
| Q |
95 |
tcagacgataagaaaaataaccaaaacctgatgatcaaaataaaatagtgaatcagatgataagccgaataatccttgctactg |
178 |
Q |
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| T |
3011860 |
tcagacaataagaaaaacaacctaaatctgatgatcaaaat--aatagtgaatcagatgataaacagaacaaccgttgctactg |
3011941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 11784405 - 11784357
Alignment:
| Q |
182 |
ttaatcaagtaaacagctctggctagctgagtagtggtttcttcatctc |
230 |
Q |
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|||||||||||||||||| |||| ||| |||| |||||||||||||||| |
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| T |
11784405 |
ttaatcaagtaaacagctttggccagcagagttgtggtttcttcatctc |
11784357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 11778991 - 11778940
Alignment:
| Q |
179 |
atgttaatcaagtaaacagctctggctagctgagtagtggtttcttcatctc |
230 |
Q |
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| T |
11778991 |
atgttaatcaagtaaacagctttggccaacagagttgtggtttcttcatctc |
11778940 |
T |
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