View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11952_low_4 (Length: 642)
Name: NF11952_low_4
Description: NF11952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11952_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 242 - 626
Target Start/End: Original strand, 12400437 - 12400809
Alignment:
| Q |
242 |
ttttttcataaagctgctattagtggtaggtccatgactaattaaaaagttttaataaccaacttggatcatactgataaactaattaggcataccaaaa |
341 |
Q |
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| T |
12400437 |
ttttttcataaagctgctattagtggtaggtccatgactaattaaaaagttttaataaacaacttggatcatactgataaactaattaggcataccaaaa |
12400536 |
T |
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| Q |
342 |
agctacttttatattttaactcatctaccaatgttgcttgtcattcactaaatcactcaactttatttaattttagaaaacttgtgtatgtcggatcgat |
441 |
Q |
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| T |
12400537 |
agctacttttatattttaactcatctaccaatgt-------cattcactaaatcactcaactttatttaattttagaaaacttgtgtatgtcggatgg-- |
12400627 |
T |
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| Q |
442 |
caggagtactccagtttgaatcctgactgaaataatttttgatcagaatttatctacctttcggttgaattctaaattaccggtgccaatttgtcctaaa |
541 |
Q |
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| T |
12400628 |
---gagtactcgagtttgaatcctgactgaaataattcttgatcagaatttatctacctttcggttgaattctaaattaccggtgccaatttgtcctaaa |
12400724 |
T |
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| Q |
542 |
aaccggattggttaagaccaaaaataaacaaattactcaactttgccctagcaaatagaagaaaggcataccaattttgataggt |
626 |
Q |
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| T |
12400725 |
aaccggattggttaagaccaaaaataaacaaattactcaactttgccctagcaaatagaagcaaggcataccaattttgataggt |
12400809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 12400194 - 12400372
Alignment:
| Q |
1 |
ggtagaggctgaaaactgaatcaccatgtatgaagtcataagttcgtgggtaagtagacatggcttcacacctgagacaagacaaaagtagtaagtaatc |
100 |
Q |
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| T |
12400194 |
ggtagaggctgaaaactgaatcaccatgtatgaagtcataagttcgtgggtaagtagacatggcttcacacctgagacaagacaaaagtagtaagtaatc |
12400293 |
T |
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| Q |
101 |
atttttaactaccacatgcttaggacaaatgtttgcattagatttcatattggaccatagaatctgaaacaatagtgaa |
179 |
Q |
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| T |
12400294 |
atttttaactaccacatgcttaggacaaatgtttgcattagatttcatattggaccatagaatctgaaacaatagtgaa |
12400372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 28637780 - 28637838
Alignment:
| Q |
18 |
gaatcaccatgtatgaagtcataagttcgtgggtaagtagacatggcttcacacctgag |
76 |
Q |
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| T |
28637780 |
gaatcagcatgtataaagtcataggttctaggataagtggacatggcttcacacctgag |
28637838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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