View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11952_low_6 (Length: 577)

Name: NF11952_low_6
Description: NF11952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11952_low_6
NF11952_low_6
[»] chr1 (46 HSPs)
chr1 (82-490)||(44448408-44448823)
chr1 (168-250)||(19431386-19431468)
chr1 (168-251)||(46325587-46325669)
chr1 (173-254)||(24671165-24671246)
chr1 (21-68)||(97039-97086)
chr1 (173-252)||(3950296-3950375)
chr1 (21-68)||(19156925-19156972)
chr1 (173-253)||(48914986-48915066)
chr1 (173-253)||(48915377-48915457)
chr1 (25-68)||(31782844-31782887)
chr1 (179-253)||(46325425-46325497)
chr1 (170-220)||(4213838-4213888)
chr1 (150-250)||(11872166-11872266)
chr1 (21-68)||(2424326-2424373)
chr1 (173-236)||(19456311-19456374)
chr1 (21-68)||(19525158-19525205)
chr1 (21-68)||(19525819-19525866)
chr1 (21-68)||(19526293-19526340)
chr1 (21-68)||(21141763-21141810)
chr1 (21-68)||(22525127-22525174)
chr1 (170-253)||(49315732-49315815)
chr1 (21-68)||(52803042-52803088)
chr1 (27-68)||(13639121-13639162)
chr1 (173-226)||(26478599-26478652)
chr1 (21-66)||(50343111-50343156)
chr1 (184-228)||(15106243-15106287)
chr1 (168-252)||(17368392-17368476)
chr1 (28-68)||(30890930-30890970)
chr1 (21-68)||(19524310-19524357)
chr1 (168-247)||(34430027-34430106)
chr1 (21-68)||(47503193-47503240)
chr1 (179-253)||(5398029-5398103)
chr1 (184-253)||(48915187-48915256)
chr1 (168-220)||(26056833-26056885)
chr1 (174-226)||(49177432-49177483)
chr1 (21-68)||(51321613-51321660)
chr1 (191-253)||(7537002-7537064)
chr1 (26-68)||(26876573-26876615)
chr1 (199-253)||(27032326-27032380)
chr1 (199-253)||(27907713-27907767)
chr1 (198-248)||(33939622-33939672)
chr1 (199-253)||(48843386-48843440)
chr1 (199-236)||(51748579-51748616)
chr1 (180-228)||(17923861-17923909)
chr1 (28-68)||(23275240-23275280)
chr1 (173-253)||(50539729-50539809)
[»] chr8 (41 HSPs)
chr8 (168-248)||(20896183-20896263)
chr8 (168-250)||(44132869-44132951)
chr8 (21-68)||(15035845-15035892)
chr8 (21-68)||(39602496-39602543)
chr8 (21-68)||(43212414-43212461)
chr8 (21-68)||(34369655-34369702)
chr8 (21-68)||(34370983-34371030)
chr8 (25-68)||(39252912-39252955)
chr8 (21-68)||(41249225-41249272)
chr8 (172-220)||(1898097-1898145)
chr8 (173-221)||(4834971-4835019)
chr8 (174-253)||(33445807-33445885)
chr8 (170-252)||(35910591-35910671)
chr8 (21-68)||(39938336-39938383)
chr8 (190-243)||(12964350-12964403)
chr8 (21-68)||(20858171-20858218)
chr8 (168-250)||(33681270-33681352)
chr8 (21-68)||(42484700-42484747)
chr8 (170-224)||(10968540-10968594)
chr8 (171-252)||(42127182-42127263)
chr8 (21-54)||(45065141-45065174)
chr8 (168-220)||(15135969-15136021)
chr8 (173-253)||(22786555-22786635)
chr8 (173-253)||(35793179-35793259)
chr8 (28-68)||(43188963-43189003)
chr8 (21-68)||(488819-488866)
chr8 (21-68)||(1053450-1053497)
chr8 (168-230)||(6473965-6474025)
chr8 (189-252)||(15682638-15682701)
chr8 (21-68)||(23021421-23021468)
chr8 (21-68)||(26660372-26660419)
chr8 (21-68)||(34822133-34822180)
chr8 (29-68)||(39846115-39846154)
chr8 (175-253)||(41951194-41951270)
chr8 (168-218)||(226342-226392)
chr8 (168-218)||(702755-702805)
chr8 (168-218)||(739965-740015)
chr8 (168-218)||(863860-863910)
chr8 (200-253)||(33938620-33938673)
chr8 (21-70)||(45128625-45128674)
chr8 (184-224)||(35693451-35693491)
[»] chr4 (40 HSPs)
chr4 (168-253)||(44015408-44015493)
chr4 (152-243)||(19473031-19473122)
chr4 (21-68)||(21022006-21022053)
chr4 (150-253)||(36498577-36498680)
chr4 (23-70)||(37021193-37021240)
chr4 (173-236)||(46079341-46079404)
chr4 (173-267)||(5052084-5052178)
chr4 (168-250)||(50041810-50041892)
chr4 (168-250)||(50049032-50049114)
chr4 (21-70)||(3184902-3184951)
chr4 (173-242)||(23332126-23332195)
chr4 (169-250)||(30643590-30643670)
chr4 (24-68)||(50275627-50275671)
chr4 (173-236)||(29544163-29544226)
chr4 (21-68)||(30725909-30725956)
chr4 (26-68)||(40357398-40357440)
chr4 (173-253)||(11077862-11077942)
chr4 (168-220)||(52198391-52198443)
chr4 (21-68)||(1088841-1088888)
chr4 (173-224)||(29693233-29693284)
chr4 (168-243)||(31455890-31455965)
chr4 (21-68)||(41798095-41798142)
chr4 (21-68)||(44679175-44679222)
chr4 (21-68)||(50194364-50194411)
chr4 (173-234)||(52673199-52673260)
chr4 (171-243)||(53176859-53176931)
chr4 (21-64)||(1308275-1308318)
chr4 (174-221)||(29724351-29724398)
chr4 (174-252)||(33913960-33914036)
chr4 (21-68)||(46437107-46437154)
chr4 (21-59)||(9892387-9892425)
chr4 (199-236)||(9116261-9116298)
chr4 (21-70)||(11083127-11083176)
chr4 (21-68)||(6180890-6180937)
chr4 (21-68)||(31422614-31422661)
chr4 (21-68)||(49165959-49166006)
chr4 (25-68)||(50902380-50902423)
chr4 (200-253)||(40683257-40683308)
chr4 (184-221)||(1208706-1208743)
chr4 (188-221)||(27841088-27841121)
[»] chr5 (38 HSPs)
chr5 (152-252)||(33922842-33922942)
chr5 (172-253)||(19824594-19824675)
chr5 (150-253)||(3622180-3622283)
chr5 (21-68)||(27672769-27672816)
chr5 (172-253)||(22029850-22029931)
chr5 (173-226)||(34928831-34928884)
chr5 (168-240)||(33953151-33953223)
chr5 (21-68)||(7758214-7758261)
chr5 (172-253)||(14281809-14281891)
chr5 (173-226)||(22658864-22658917)
chr5 (21-68)||(13914-13961)
chr5 (21-68)||(8579623-8579670)
chr5 (170-253)||(17250466-17250548)
chr5 (21-68)||(19040217-19040264)
chr5 (23-68)||(5197850-5197895)
chr5 (168-241)||(17138535-17138608)
chr5 (168-220)||(3622323-3622375)
chr5 (21-68)||(28240940-28240987)
chr5 (21-68)||(28877551-28877598)
chr5 (176-246)||(9956624-9956694)
chr5 (183-221)||(18623597-18623635)
chr5 (197-234)||(2651651-2651688)
chr5 (168-253)||(8230774-8230858)
chr5 (175-236)||(42321087-42321148)
chr5 (173-221)||(14151943-14151991)
chr5 (174-250)||(18267856-18267932)
chr5 (21-68)||(19228064-19228111)
chr5 (21-68)||(30706011-30706058)
chr5 (172-242)||(31882592-31882660)
chr5 (191-250)||(32821929-32821988)
chr5 (21-67)||(42941605-42941651)
chr5 (172-228)||(14139398-14139452)
chr5 (168-253)||(25468156-25468241)
chr5 (163-228)||(27554914-27554979)
chr5 (163-239)||(41006638-41006714)
chr5 (199-235)||(10372037-10372073)
chr5 (173-221)||(22653522-22653570)
chr5 (28-68)||(40624044-40624084)
[»] chr6 (25 HSPs)
chr6 (168-268)||(26847135-26847235)
chr6 (168-228)||(457684-457744)
chr6 (171-250)||(24226071-24226150)
chr6 (168-253)||(6793504-6793589)
chr6 (168-253)||(8585712-8585797)
chr6 (168-250)||(28963586-28963668)
chr6 (168-233)||(512773-512838)
chr6 (21-68)||(27617641-27617688)
chr6 (197-253)||(28067322-28067378)
chr6 (175-253)||(6139328-6139406)
chr6 (170-220)||(28729977-28730027)
chr6 (174-236)||(9549393-9549459)
chr6 (184-239)||(4870529-4870584)
chr6 (21-68)||(6202074-6202121)
chr6 (21-68)||(11689041-11689088)
chr6 (21-68)||(22302106-22302153)
chr6 (21-68)||(30828752-30828799)
chr6 (172-219)||(32267018-32267065)
chr6 (172-226)||(167182-167236)
chr6 (199-253)||(7506642-7506696)
chr6 (199-253)||(9928271-9928325)
chr6 (23-68)||(6319681-6319726)
chr6 (199-236)||(22469726-22469763)
chr6 (174-250)||(3037376-3037452)
chr6 (168-220)||(31175991-31176043)
[»] chr3 (40 HSPs)
chr3 (173-253)||(10688618-10688698)
chr3 (21-68)||(2274041-2274088)
chr3 (21-68)||(36128506-36128553)
chr3 (21-68)||(50963866-50963913)
chr3 (173-253)||(46348393-46348473)
chr3 (21-68)||(597809-597856)
chr3 (21-68)||(3976615-3976662)
chr3 (21-68)||(41613242-41613289)
chr3 (25-68)||(42166076-42166119)
chr3 (21-68)||(47073324-47073371)
chr3 (21-68)||(52390506-52390553)
chr3 (23-68)||(50216054-50216099)
chr3 (21-68)||(17567213-17567260)
chr3 (21-68)||(29009785-29009832)
chr3 (171-253)||(16278782-16278864)
chr3 (197-239)||(20345075-20345117)
chr3 (171-220)||(34305830-34305879)
chr3 (19-68)||(44230608-44230657)
chr3 (25-68)||(16611995-16612038)
chr3 (25-68)||(20351517-20351560)
chr3 (25-68)||(22047215-22047258)
chr3 (173-228)||(39485471-39485526)
chr3 (173-228)||(47548871-47548926)
chr3 (21-68)||(49268386-49268433)
chr3 (179-246)||(7654571-7654639)
chr3 (168-243)||(16013504-16013579)
chr3 (21-68)||(20917134-20917181)
chr3 (21-68)||(20926096-20926143)
chr3 (21-68)||(34046301-34046348)
chr3 (21-68)||(42903290-42903337)
chr3 (21-68)||(49143563-49143610)
chr3 (21-68)||(50479907-50479954)
chr3 (199-253)||(4037151-4037205)
chr3 (199-253)||(11233516-11233570)
chr3 (199-253)||(49279499-49279553)
chr3 (192-253)||(30240878-30240939)
chr3 (172-253)||(39488481-39488562)
chr3 (199-236)||(39994218-39994255)
chr3 (27-68)||(54387055-54387096)
chr3 (178-214)||(132151-132187)
[»] chr2 (32 HSPs)
chr2 (170-250)||(13477687-13477767)
chr2 (173-253)||(23395943-23396023)
chr2 (173-253)||(32832594-32832674)
chr2 (173-228)||(6752075-6752130)
chr2 (21-68)||(28469549-28469596)
chr2 (173-236)||(41069674-41069737)
chr2 (21-68)||(45429499-45429546)
chr2 (173-234)||(39729015-39729076)
chr2 (172-273)||(40204727-40204828)
chr2 (168-220)||(28640136-28640188)
chr2 (21-68)||(10828120-10828167)
chr2 (184-253)||(36562752-36562821)
chr2 (173-253)||(11226156-11226236)
chr2 (21-68)||(17421437-17421484)
chr2 (21-68)||(29400715-29400762)
chr2 (25-68)||(36655508-36655551)
chr2 (21-68)||(39948509-39948556)
chr2 (189-253)||(1208626-1208690)
chr2 (21-68)||(15832043-15832090)
chr2 (171-226)||(38529879-38529934)
chr2 (21-68)||(45136423-45136470)
chr2 (187-243)||(8209313-8209369)
chr2 (21-68)||(3939840-3939887)
chr2 (21-68)||(30496047-30496094)
chr2 (21-68)||(43979445-43979492)
chr2 (199-253)||(3496805-3496859)
chr2 (173-243)||(16401124-16401194)
chr2 (199-253)||(19037073-19037127)
chr2 (183-253)||(21835996-21836066)
chr2 (205-243)||(38034608-38034646)
chr2 (168-253)||(13772780-13772865)
chr2 (28-68)||(43538838-43538878)
[»] chr7 (48 HSPs)
chr7 (150-248)||(19495122-19495220)
chr7 (168-242)||(32204763-32204837)
chr7 (173-254)||(685001-685082)
chr7 (21-70)||(42507192-42507241)
chr7 (21-68)||(15073385-15073432)
chr7 (26-68)||(10517808-10517850)
chr7 (172-236)||(33957481-33957543)
chr7 (152-253)||(43368466-43368567)
chr7 (173-253)||(2628437-2628517)
chr7 (21-68)||(16677937-16677984)
chr7 (21-68)||(17652173-17652220)
chr7 (21-68)||(19798181-19798228)
chr7 (173-228)||(32279295-32279350)
chr7 (25-68)||(34739276-34739319)
chr7 (173-268)||(40591010-40591105)
chr7 (21-68)||(46739630-46739677)
chr7 (173-253)||(37685191-37685269)
chr7 (168-220)||(22715812-22715864)
chr7 (21-68)||(5540692-5540739)
chr7 (21-68)||(17835985-17836032)
chr7 (196-243)||(41851266-41851313)
chr7 (198-253)||(42691095-42691150)
chr7 (167-234)||(42971638-42971705)
chr7 (168-227)||(43279244-43279302)
chr7 (21-68)||(47777159-47777206)
chr7 (173-221)||(9488770-9488819)
chr7 (173-221)||(11369056-11369104)
chr7 (25-65)||(27452739-27452779)
chr7 (21-68)||(9370490-9370537)
chr7 (21-68)||(9493922-9493969)
chr7 (197-228)||(15667903-15667934)
chr7 (21-68)||(17462405-17462452)
chr7 (21-68)||(17590762-17590809)
chr7 (170-220)||(23021211-23021259)
chr7 (21-68)||(41881416-41881463)
chr7 (197-236)||(42266449-42266488)
chr7 (21-68)||(48404283-48404330)
chr7 (199-253)||(16876743-16876797)
chr7 (199-253)||(18867954-18868008)
chr7 (199-253)||(23185929-23185983)
chr7 (172-253)||(27311776-27311855)
chr7 (191-253)||(30880455-30880517)
chr7 (199-253)||(46425344-46425398)
chr7 (199-236)||(34328132-34328169)
chr7 (200-253)||(43375716-43375769)
chr7 (201-253)||(30061171-30061223)
chr7 (186-242)||(33747977-33748033)
chr7 (180-236)||(33884051-33884107)
[»] scaffold0085 (1 HSPs)
scaffold0085 (168-239)||(31595-31666)
[»] scaffold0180 (1 HSPs)
scaffold0180 (21-68)||(14739-14786)
[»] scaffold0155 (1 HSPs)
scaffold0155 (21-68)||(11170-11217)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 82 - 490
Target Start/End: Original strand, 44448408 - 44448823
Alignment:
Q  82 aacctgtgccaaatagtgtatataaagtaggtaagttttggatttcatttgggtgacatagnnnnnnnggtgacattgttaatatcagtgtattttagat 181  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||||||| ||||||||||||||    
T  44448408 aacctatgccaaatagtgtatataaagtaggtaagttttggatttcatttgggtgacctagtttttttggtgacattgttaatattagtgtattttagat 44448507  T
Q  182 gagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagaga-------tgtcaccaatgtcatccaaatg 274  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |       |||||||||||||| | |||||    
T  44448508 gggagagaatgatatatgaatgattaaaataaattatttaaatgagataaaatgattgattaggagagatagaaacaatgtcaccaatgtcacctaaatg 44448607  T
Q  275 ttatccgtaagtcttttatcatcataagatttagtcgcaacttacatacatatacattaaagagaaaaaattaaataatgaagaatactaaatgatatac 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44448608 ttatccgtaagtcttttatcatcataagatttagtcgcaacttacatacacatacattaaagagaaaaaattaaataatgaagaatactaaatgatatac 44448707  T
Q  375 aattttatgcatgctcaaataattattatttagagtagtggccaatcaagtaattctctctgaagtaacattatttatttaatctctcctaaagaaatat 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44448708 aattttatgcatgctcaaataattattatttagagtagtggccaatcaagtaattctctctaaagtaacattatttatttaatctctcctaaagaaatat 44448807  T
Q  475 ttgcttgattataaac 490  Q
    ||||||||||||||||    
T  44448808 ttgcttgattataaac 44448823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 19431386 - 19431468
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagaga 250  Q
    |||||||||||||||||| ||||||||  ||||||||||||||||||||||||| |||||| |||||||||| ||| ||||||    
T  19431386 agtgtattttagatgagacagaatgatggatgaatgattaaaataaattatttagatgagagagaatgattggttaagagaga 19431468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 46325587 - 46325669
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagag 251  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||| ||||||  |||||| |||||||||||||| |||||||    
T  46325587 agtgtatttt-gatgagagagaatgatagatgaatgattaaaataagttattttgatgagagagaatgattgattatgagagag 46325669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 173 - 254
Target Start/End: Complemental strand, 24671246 - 24671165
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagatg 254  Q
    ||||||||||||||||| ||||  |||||||||||||||||||||||||||||||| ||||||| || ||| |||| |||||    
T  24671246 attttagatgagagagagtgatgaatgaatgattaaaataaattatttaaatgagagagaatgagtggttaagagaaagatg 24671165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 97086 - 97039
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  97086 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 97039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 3950296 - 3950375
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagaga 252  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||  |||| | ||||| |||||||| ||||||||    
T  3950296 attttagatgagagagaatgatcgatgaatgattaaaataaattattttgatgaaagagaataattgattaagagagaga 3950375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 19156925 - 19156972
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19156925 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 19156972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 48914986 - 48915066
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||  |||||| ||||||| |  ||| |||||||||    
T  48914986 attttagatgagagagaatgatgaatgaatgattaaaataaattattttgatgagagagaatgagttgttaagagagagat 48915066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 48915377 - 48915457
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||  |||||| ||||||| |  ||| |||||||||    
T  48915377 attttagatgagagagaatgatgaatgaatgattaaaataaattattttgatgagagagaatgagttgttaagagagagat 48915457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 31782887 - 31782844
Alignment:
Q  25 gagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  31782887 gagggagaggcagagcggccacatcccaaagaggggtagaggtc 31782844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 46325497 - 46325425
Alignment:
Q  179 gatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||||||| |||||||| ||||||||||||||||||||||||  |||||  |||||||||||||| |||||||||    
T  46325497 gatgagagggaatgatagatgaatgattaaaataaattattttgatgag--agaatgattgattatgagagagat 46325425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 4213838 - 4213888
Alignment:
Q  170 tgtattttagatgagagagaatgatatatgaatgattaaaataaattattt 220  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  4213838 tgtattttagatgagagagaacgatatatgagtgattaaaataaattattt 4213888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 11872166 - 11872266
Alignment:
Q  150 ggtgacattgttaatatcagtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagag 249  Q
    |||||| ||||| || | |||||||||||||||| ||||||||||   |||||||||| ||||||||||||  |||||| ||||| |||| ||| |||||    
T  11872166 ggtgactttgttgattttagtgtattttagatgaaagagaatgatgattgaatgattataataaattattttgatgagagagaattattggttatgagag 11872265  T
Q  250 a 250  Q
    |    
T  11872266 a 11872266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 2424373 - 2424326
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||    
T  2424373 accggagggagaggtagagcgcccacatcccaaagaggggtagaggtc 2424326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 19456311 - 19456374
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatga 236  Q
    ||||||||||||||||||||||  ||  ||||||||||||||||||||| |||||| |||||||    
T  19456311 attttagatgagagagaatgatgaatagatgattaaaataaattatttagatgagagagaatga 19456374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 19525205 - 19525158
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||    
T  19525205 accggagagagaggcagagcggccacatcccaaagaagggtagaggtc 19525158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 19525866 - 19525819
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||    
T  19525866 accggagagagaggcagagcggccacatcccaaagaagggtagaggtc 19525819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 19526340 - 19526293
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||    
T  19526340 accggagagagaggcagagcggccacatcccaaagaagggtagaggtc 19526293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 21141763 - 21141810
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||    
T  21141763 accggagggagaggcaaagtggccacatcccaaagaggggtagaggtc 21141810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 22525127 - 22525174
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||    
T  22525127 accgaagggagaggcagagcgtccacatcccaaagaggggtagaggtc 22525174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 253
Target Start/End: Original strand, 49315732 - 49315815
Alignment:
Q  170 tgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||||||  |||||||||||||| || |||| |||||||||||||||||||  |||| ||| ||| |||||||| |||||||||    
T  49315732 tgtatttaggatgagagagaatggtagatgagtgattaaaataaattattttgatgaaatataattattgattatgagagagat 49315815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 52803042 - 52803088
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  52803042 accggagggagaggcagagcggccacatcccaaaga-gggtagaggtc 52803088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 13639162 - 13639121
Alignment:
Q  27 gggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  13639162 gggagagacagagcggccacatcccaaagaggggtagaggtc 13639121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 26478652 - 26478599
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatga 226  Q
    ||||||||||||||||||||||  |||||| |||||||||||| ||||||||||    
T  26478652 attttagatgagagagaatgatgaatgaataattaaaataaatcatttaaatga 26478599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 50343156 - 50343111
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagagg 66  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||    
T  50343156 accggagggagcggcaaagcggccacatcccaaagaggggtagagg 50343111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 15106287 - 15106243
Alignment:
Q  184 gagagaatgatatatgaatgattaaaataaattatttaaatgaga 228  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||    
T  15106287 gagagaatgatagatgaatgattaaaataaattatttacatgaga 15106243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 17368392 - 17368476
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagaga 252  Q
    |||||||||||||||| ||||| ||||   ||||| |||||||||||||||||  |||||| ||||| |||| |||||| |||||    
T  17368392 agtgtattttagatgaaagagagtgatgattgaataattaaaataaattattttgatgagagagaattattggttaggaaagaga 17368476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 30890930 - 30890970
Alignment:
Q  28 ggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  30890930 ggagagacagagcggccacatcccaaagaggggtagaggtc 30890970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 19524357 - 19524310
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||||    
T  19524357 accggagagagaggcagagcggccacatcccaaagaaggggagaggtc 19524310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 34430106 - 34430027
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggag 247  Q
    |||| ||||||||||||| |||| | || |||||||||||||||||||||||||    ||| ||||| ||||||||||||    
T  34430106 agtgcattttagatgagaaagaaagttagatgaatgattaaaataaattatttaccctagagagaataattgattaggag 34430027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 47503193 - 47503240
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||| || |||||||||||| ||||||||||||||||||    
T  47503193 accggagggagagacaaagcggccacatctcaaagaggggtagaggtc 47503240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 5398029 - 5398103
Alignment:
Q  179 gatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||| |||||||||||  |||||| ||||||||||| |||||| |||||| ||||||| || ||| |||||||||    
T  5398029 gatgggagagaatgatgaatgaattattaaaataaactatttagatgagagagaatgagtggttaagagagagat 5398103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 48915187 - 48915256
Alignment:
Q  184 gagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||||||||||  ||||||||||||||||||||||||  |||||| ||||||| |  ||| |||||||||    
T  48915187 gagagaatgatgaatgaatgattaaaataaattattttgatgagagagaatgagttgttaagagagagat 48915256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 26056885 - 26056833
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattattt 220  Q
    |||||||||||||||||| ||| ||||| || ||| |||||||||||||||||    
T  26056885 agtgtattttagatgagatagagtgatagataaataattaaaataaattattt 26056833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 49177483 - 49177432
Alignment:
Q  174 ttttagatgagagagaatgatatatgaatgattaaaataaattatttaaatga 226  Q
    |||||||||||||| ||||||  ||||||||||||||||||||||||| ||||    
T  49177483 ttttagatgagagaaaatgatg-atgaatgattaaaataaattatttagatga 49177432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 51321613 - 51321660
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||| ||||||||| ||||| ||||||||||||||||| |||||||    
T  51321613 accggaaggagaggcaaagcgggcacatcccaaagaggggaagaggtc 51321660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 7537002 - 7537064
Alignment:
Q  191 tgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||||||| |||||||||||||||||||||  || | | ||| |||||| |||||||||||||    
T  7537002 tgatatataaatgattaaaataaattattttgataaaagagagtgattggttaggagagagat 7537064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 26876573 - 26876615
Alignment:
Q  26 agggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||| ||||| | ||||||||||||||||||||||||||    
T  26876573 agggagagacagagtgcccacatcccaaagaggggtagaggtc 26876615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 27032326 - 27032380
Alignment:
Q  199 gaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||||| |||||| ||||||| |  ||| |||||||||    
T  27032326 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagat 27032380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 27907767 - 27907713
Alignment:
Q  199 gaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||||| |||||| ||||||| |  ||| |||||||||    
T  27907767 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagat 27907713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 33939622 - 33939672
Alignment:
Q  198 tgaatgattaaaataaattatttaaatgagatagaatgattgattaggaga 248  Q
    ||||||||||||||||||||||| ||||| | ||||| |||| ||||||||    
T  33939622 tgaatgattaaaataaattattttaatgataaagaattattggttaggaga 33939672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 48843440 - 48843386
Alignment:
Q  199 gaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||||| |||||| ||||||| |  ||| |||||||||    
T  48843440 gaatgattaaaataaattatttagatgagagagaatgaattgttaagagagagat 48843386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 51748616 - 51748579
Alignment:
Q  199 gaatgattaaaataaattatttaaatgagatagaatga 236  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  51748616 gaatgattaaaataaattatttagatgagagagaatga 51748579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 17923909 - 17923861
Alignment:
Q  180 atgagagagaatgatatatgaatgattaaaataaattatttaaatgaga 228  Q
    ||||||||||||| |  |||||| |||||||||||||||||| ||||||    
T  17923909 atgagagagaatgttggatgaataattaaaataaattatttagatgaga 17923861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 23275280 - 23275240
Alignment:
Q  28 ggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||| ||||| ||||||||||||||||| |||||||    
T  23275280 ggagaggcaaagcgggcacatcccaaagaggggaagaggtc 23275240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 50539729 - 50539809
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||||||| |||||| ||||||  ||  |||||||||||||||||||||||| | | ||||||| |  ||| |||||||||    
T  50539729 attttagaagagagataatgatgaatagatgattaaaataaattatttaaataaaagagaatgagttgttaagagagagat 50539809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 20896183 - 20896263
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggaga 248  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||    
T  20896183 agtgcattttagatgagagataatgatatatgaatgattaaaataaattatttagatgagagagaatgattgattaagaga 20896263  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 44132869 - 44132951
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagaga 250  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||  |||||| ||||| |||| ||| ||||||    
T  44132869 agtgtattttagatgagagataatgatagatgaatgattaaaataaattattttgatgagagagaattattggttaagagaga 44132951  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 15035892 - 15035845
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15035892 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 15035845  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 39602496 - 39602543
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39602496 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 39602543  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 43212414 - 43212461
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43212414 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 43212461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 34369702 - 34369655
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34369702 accggagggagaggcagagcgaccacatcccaaagaggggtagaggtc 34369655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 34371030 - 34370983
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34371030 accggagggagaggcagagcgaccacatcccaaagaggggtagaggtc 34370983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 39252912 - 39252955
Alignment:
Q  25 gagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  39252912 gagggagaggcagagcggccacatcccaaagaggggtagaggtc 39252955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 41249272 - 41249225
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41249272 accggagggagaggcagagcggccacatcccaaagagaggtagaggtc 41249225  T

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Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 1898097 - 1898145
Alignment:
Q  172 tattttagatgagagagaatgatatatgaatgattaaaataaattattt 220  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||    
T  1898097 tattttagatgagagagaatgatatataactgattaaaataaattattt 1898145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 4834971 - 4835019
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattattta 221  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||    
T  4834971 attttagatgagagagaatgatgaatgaatgattaaaataaattattta 4835019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 33445807 - 33445885
Alignment:
Q  174 ttttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||| |||||||||| | ||||||||||| ||||||||||| |||||| | ||||||||||||  ||||||||    
T  33445807 ttttagatgagtgagaatgataaaagaatgattaaa-taaattatttagatgagagaaaatgattgattaatagagagat 33445885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 35910671 - 35910591
Alignment:
Q  170 tgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagaga 252  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||| ||||  ||||||  |||| |||| ||||||||||||    
T  35910671 tgtattttagatgagagag--tgataaatgaatgattaaaataaatcattttgatgagagggaattattggttaggagagaga 35910591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 39938383 - 39938336
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||    
T  39938383 accggagggagaggtagagcggccacgtcccaaagaggggtagaggtc 39938336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 12964403 - 12964350
Alignment:
Q  190 atgatatatgaatgattaaaataaattatttaaatgagatagaatgattgatta 243  Q
    |||||||||||||||||||||||||||||||  |||| | ||||||||||||||    
T  12964403 atgatatatgaatgattaaaataaattattttgatgaaagagaatgattgatta 12964350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 20858171 - 20858218
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||||||| ||||| ||||||||||||||||| |||||||    
T  20858171 accggagggagaggcaaagcggtcacatcccaaagaggggaagaggtc 20858218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 33681270 - 33681352
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaatta-tttaaatgagatagaatgattgattaggagaga 250  Q
    |||||||||| |||| |||||||||||| || |||||||||||||||||| |||  |||||| || ||||||| ||||||||||    
T  33681270 agtgtatttt-gatgtgagagaatgatagataaatgattaaaataaattattttttatgagagagcatgattggttaggagaga 33681352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 42484747 - 42484700
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| |||| |||||||||||||||||||||||||||||    
T  42484747 accgcagggagagacagaacggccacatcccaaagaggggtagaggtc 42484700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 10968540 - 10968594
Alignment:
Q  170 tgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaat 224  Q
    |||||||||||||||||| |||  || ||||| ||||||||||||||||||||||    
T  10968540 tgtattttagatgagagaaaatattagatgaaagattaaaataaattatttaaat 10968594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 42127182 - 42127263
Alignment:
Q  171 gtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagaga 252  Q
    |||||||||| || ||||| |||| | |||||||||||||||||||||||  |||||| | ||| |||| ||||||| ||||    
T  42127182 gtattttagaagaaagagagtgatgtttgaatgattaaaataaattattttgatgagaaataattattggttaggagggaga 42127263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 45065141 - 45065174
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaa 54  Q
    ||||||||||||||||||||||||||||||||||    
T  45065141 accggagggagaggcagagcggccacatcccaaa 45065174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 15136021 - 15135969
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattattt 220  Q
    |||||||||||||| ||||| | ||||| |||| |||||||||||||||||||    
T  15136021 agtgtattttagataagagaaagtgatagatgagtgattaaaataaattattt 15135969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 22786635 - 22786555
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||| | ||||||||| || ||| |||||| |||||||||||||||| | ||||||| || |||  ||||||||    
T  22786635 attttagatgaaaaagaatgataaataaataattaaagtaaattatttaaatgaaagagaatgaatggttaaaagagagat 22786555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 35793259 - 35793179
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||| ||||||| || ||||| | |||||| ||||||||||||||||||||||||| | ||||| |  ||| |||||||||    
T  35793259 atttgagatgagtgacaatgaaaaatgaataattaaaataaattatttaaatgagagataatgagtagttaagagagagat 35793179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 43188963 - 43189003
Alignment:
Q  28 ggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||| ||||||||||||||||||| |||||||||||    
T  43188963 ggagaggcaaagcggccacatcccaaagaagggtagaggtc 43189003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 488866 - 488819
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  488866 accgcagggagagacagagtgcccacatcccaaagaggggtagaggtc 488819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 1053450 - 1053497
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  1053450 accgcagggagagacagagtgcccacatcccaaagaggggtagaggtc 1053497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 6473965 - 6474025
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagata 230  Q
    ||||||||||||| |||| |  || |||||||| ||||||||||||||||||| |||||||||    
T  6473965 agtgtattttagacgagaaa--ataatatatgagtgattaaaataaattattttaatgagata 6474025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 15682638 - 15682701
Alignment:
Q  189 aatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagaga 252  Q
    |||||||||||||||| |||||||| ||||||  |||| | |||||||| | ||||||||||||    
T  15682638 aatgatatatgaatgactaaaataagttattttgatgaaaaagaatgatcggttaggagagaga 15682701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 23021468 - 23021421
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  23021468 accgcagggagagacagagtgcccacatcccaaagaggggtagaggtc 23021421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 26660372 - 26660419
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  26660372 accgcagggagagacagagtgcccacatcccaaagaggggtagaggtc 26660419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 34822180 - 34822133
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||| ||||||||| ||||| ||||||||||||||||| |||||||    
T  34822180 accggaaggagaggcaaagcgggcacatcccaaagaggggaagaggtc 34822133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 39846154 - 39846115
Alignment:
Q  29 gagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||| ||||||||||||||||||||||||| |||||    
T  39846154 gagaggcaaagcggccacatcccaaagaggggtaaaggtc 39846115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 253
Target Start/End: Complemental strand, 41951270 - 41951194
Alignment:
Q  175 tttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||| ||||  ||||| |||||||| |||| |||||||| |  |||||| ||||| ||||||||||||||||||    
T  41951270 tttagatgaaagag--tgataaatgaatgagtaaattaaattatcttgatgagagagaattattgattaggagagagat 41951194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 226342 - 226392
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattat 218  Q
    |||||||||||||||| ||||| | |||  |||||||||||||||||||||    
T  226342 agtgtattttagatgaaagagagttataattgaatgattaaaataaattat 226392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 702755 - 702805
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattat 218  Q
    |||||||||||||||| ||||| | |||  |||||||||||||||||||||    
T  702755 agtgtattttagatgaaagagagttataattgaatgattaaaataaattat 702805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 739965 - 740015
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattat 218  Q
    |||||||||||||||| ||||| | |||  |||||||||||||||||||||    
T  739965 agtgtattttagatgaaagagagttataattgaatgattaaaataaattat 740015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 863860 - 863910
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattat 218  Q
    |||||||||||||||| ||||| | |||  |||||||||||||||||||||    
T  863860 agtgtattttagatgaaagagagttataattgaatgattaaaataaattat 863910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 33938620 - 33938673
Alignment:
Q  200 aatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||||||||||||||||||||| |||||| ||||||| |  ||| |||||||||    
T  33938620 aatgattaaaataaattatttagatgagagagaatgaattgttaagagagagat 33938673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 45128625 - 45128674
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtcag 70  Q
    |||||| |||||||||  |||| ||||||||||||||||| |||||||||    
T  45128625 accggaaggagaggcaaggcgggcacatcccaaagaggggaagaggtcag 45128674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 35693451 - 35693491
Alignment:
Q  184 gagagaatgatatatgaatgattaaaataaattatttaaat 224  Q
    |||||||||||| |||||| | |||||||||||||||||||    
T  35693451 gagagaatgatagatgaattagtaaaataaattatttaaat 35693491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 168 - 253
Target Start/End: Original strand, 44015408 - 44015493
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| | || ||||||||| |||||||||    
T  44015408 agtgtattttagatgagaaagaatgatagatgaatgattaaaataaattatttagatgagagataaagattgattaagagagagat 44015493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 152 - 243
Target Start/End: Original strand, 19473031 - 19473122
Alignment:
Q  152 tgacattgttaatatcagtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgatta 243  Q
    |||||||| | |||| | ||||||||||| |||||| ||||||| ||||||||||||||||||||||||| |||| | |||||||| |||||    
T  19473031 tgacattggtgatattaatgtattttagaggagagaaaatgatacatgaatgattaaaataaattatttagatgaaaaagaatgatcgatta 19473122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 21022053 - 21022006
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21022053 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 21022006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 150 - 253
Target Start/End: Original strand, 36498577 - 36498680
Alignment:
Q  150 ggtgacattgttaatatcagtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagag 249  Q
    |||||| ||| |||| | ||||||||||||||||||||| |||||| |||| |||||||||||||||||||  ||| || ||||| |||| |||| ||||    
T  36498577 ggtgactttgataattttagtgtattttagatgagagaggatgatagatgagtgattaaaataaattattttgatgtgagagaattattggttagaagag 36498676  T
Q  250 agat 253  Q
    ||||    
T  36498677 agat 36498680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 37021240 - 37021193
Alignment:
Q  23 cggagggagaggcagagcggccacatcccaaagaggggtagaggtcag 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37021240 cggagggagaggcagagcggccacatcccaaagaggggtagaggtcag 37021193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 46079341 - 46079404
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatga 236  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||| |||||| |||||||    
T  46079341 attttagatgagagagaatgatcaatgaatgattaaaataaattatttagatgagagagaatga 46079404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 173 - 267
Target Start/End: Complemental strand, 5052178 - 5052084
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagatgtcaccaatgtcat 267  Q
    |||||| |||||||||||||||| || |||||||||||||||||||||  |||||| |||||||||||||  |||||| || | | |||||||||    
T  5052178 attttaaatgagagagaatgataaataaatgattaaaataaattattttgatgagagagaatgattgattttgagagatatataaacaatgtcat 5052084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 50041810 - 50041892
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagaga 250  Q
    ||||| |||||||||||||| ||||||| ||||||||||||||||||||||||  |||||| ||||| |||| ||| ||||||    
T  50041810 agtgtgttttagatgagagataatgatagatgaatgattaaaataaattattttgatgagagagaattattggttaagagaga 50041892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 50049032 - 50049114
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagaga 250  Q
    ||||| |||||||||||||| ||||||| ||||||||||||||||||||||||  |||||| ||||| |||| ||| ||||||    
T  50049032 agtgtgttttagatgagagataatgatagatgaatgattaaaataaattattttgatgagagagaattattggttaagagaga 50049114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 3184902 - 3184951
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtcag 70  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3184902 accggagggagagacagagcggccacatcccaaagaggggtagaggtcag 3184951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 23332195 - 23332126
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgatt 242  Q
    |||||||||||||||||||| || ||||||||||||||||  |||||||||||||| ||||||| |||||    
T  23332195 attttagatgagagagaatgttagatgaatgattaaaatatgttatttaaatgagagagaatgaatgatt 23332126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 30643590 - 30643670
Alignment:
Q  169 gtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagaga 250  Q
    ||||| ||||||| ||||| ||||||  ||||||||||||||||||||||||| |||||| |||||||||||||| ||||||    
T  30643590 gtgtaatttagat-agagataatgatggatgaatgattaaaataaattatttagatgagagagaatgattgattaagagaga 30643670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 50275627 - 50275671
Alignment:
Q  24 ggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  50275627 ggagggagaggcagagcggccacatcccaaagaggggtagaggtc 50275671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 29544163 - 29544226
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatga 236  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| | |||||||    
T  29544163 attttagatgagagaaaatgataaatgaatgattaaaataaattatttagatgatagagaatga 29544226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 30725956 - 30725909
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  30725956 accgcagggagaggcagagcggccacatcccaaagaggggtagaggtc 30725909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 40357440 - 40357398
Alignment:
Q  26 agggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  40357440 agggagaggcagagcggccacatcccaaagaggggtagaggtc 40357398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 11077862 - 11077942
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||| |||| ||||||||||| |||||||||||||||  | ||||||| |||||| |||||||||||||| ||| |||||    
T  11077862 attttggatgggagagaatgatctatgaatgattaaaaatagttatttagatgagagagaatgattgattaagagtgagat 11077942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 52198443 - 52198391
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattattt 220  Q
    |||||||||||||||||||| ||||||| || |||||||||||||||||||||    
T  52198443 agtgtattttagatgagagataatgatagataaatgattaaaataaattattt 52198391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 1088888 - 1088841
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||    
T  1088888 accgcagggagaggcagagcagccacatcccaaagaggggtagaggtc 1088841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 29693284 - 29693233
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaat 224  Q
    ||||||||||||||||||||||| || ||| |||||||||||||||||||||    
T  29693284 attttagatgagagagaatgataaataaataattaaaataaattatttaaat 29693233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 31455890 - 31455965
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgatta 243  Q
    |||||| ||||||||| |||||||||   ||||||||||||||||||||||||| |||||| ||| | ||||||||    
T  31455890 agtgtactttagatgaaagagaatgaagaatgaatgattaaaataaattatttagatgagagagattaattgatta 31455965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 41798142 - 41798095
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||    
T  41798142 accgcagggagaggcagggcggccacatcccaaagaggggtagaggtc 41798095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 44679222 - 44679175
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||    
T  44679222 accggagggagaggcagagtggccacatcccaaagaagggtagaggtc 44679175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 50194364 - 50194411
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||    
T  50194364 accggagggagaggcaaagcggccacatcccaaagaggggaagaggtc 50194411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 52673199 - 52673260
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaat 234  Q
    ||||||||||||||||||||||  |||||| |||||||||||||||||  |||||| |||||    
T  52673199 attttagatgagagagaatgatgaatgaataattaaaataaattattttgatgagagagaat 52673260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 53176931 - 53176859
Alignment:
Q  171 gtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgatta 243  Q
    ||||||||||||| |||  || ||  ||||||||||||||||||||||||| |||||| | ||||||||||||    
T  53176931 gtattttagatgacagaagataatgaatgaatgattaaaataaattatttagatgagagaaaatgattgatta 53176859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 1308318 - 1308275
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtaga 64  Q
    |||| |||||||| ||||||||||||||||||||||||||||||    
T  1308318 accgcagggagagacagagcggccacatcccaaagaggggtaga 1308275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 29724351 - 29724398
Alignment:
Q  174 ttttagatgagagagaatgatatatgaatgattaaaataaattattta 221  Q
    |||||||||| ||||||| ||| |||||||||||||||||||||||||    
T  29724351 ttttagatgatagagaataataaatgaatgattaaaataaattattta 29724398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 252
Target Start/End: Complemental strand, 33914036 - 33913960
Alignment:
Q  174 ttttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagaga 252  Q
    ||||||||||||||| |  ||| ||||||||||||||||||| ||||  |||||| ||||| |||| ||||||||||||    
T  33914036 ttttagatgagagagta--ataaatgaatgattaaaataaatcattttgatgagagagaattattggttaggagagaga 33913960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 46437107 - 46437154
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||| ||||||||| ||||| |||||||||||||||||||||||||    
T  46437107 accggaaggagaggcaaagcgggcacatcccaaagaggggtagaggtc 46437154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 9892425 - 9892387
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggg 59  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  9892425 accgcagggagaggcagagcggccacatcccaaagaggg 9892387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 9116261 - 9116298
Alignment:
Q  199 gaatgattaaaataaattatttaaatgagatagaatga 236  Q
    |||||||||||||||||||||||||||||| |||||||    
T  9116261 gaatgattaaaataaattatttaaatgagagagaatga 9116298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 11083176 - 11083127
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtcag 70  Q
    |||||| ||||||||| ||||| ||||||||||||||||| |||||||||    
T  11083176 accggaaggagaggcaaagcgggcacatcccaaagaggggcagaggtcag 11083127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 6180937 - 6180890
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  6180937 accgcagggagagacagagtgcccacatcccaaagaggggtagaggtc 6180890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 31422614 - 31422661
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  31422614 accgcagggagagacagagtgcccacatcccaaagaggggtagaggtc 31422661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 49165959 - 49166006
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  49165959 accgcagggagagacagagtgcccacatcccaaagaggggtagaggtc 49166006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 50902380 - 50902423
Alignment:
Q  25 gagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||| ||| ||||||||||||||||||| |||||||    
T  50902380 gagggagaggcaaagcagccacatcccaaagaggggaagaggtc 50902423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 40683257 - 40683308
Alignment:
Q  200 aatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||||||||| ||||||||||| |||||  |||||||||||||| |||||||||    
T  40683257 aatgattaaattaaattatttatatgag--agaatgattgattaagagagagat 40683308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 1208706 - 1208743
Alignment:
Q  184 gagagaatgatatatgaatgattaaaataaattattta 221  Q
    |||||||||||  |||||||||||||||||||||||||    
T  1208706 gagagaatgatgaatgaatgattaaaataaattattta 1208743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 27841121 - 27841088
Alignment:
Q  188 gaatgatatatgaatgattaaaataaattattta 221  Q
    |||||||| |||||||||||||||||||||||||    
T  27841121 gaatgatagatgaatgattaaaataaattattta 27841088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 152 - 252
Target Start/End: Original strand, 33922842 - 33922942
Alignment:
Q  152 tgacattgttaatatcagtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagag 251  Q
    |||||||| | |||| |||||||| ||||||||||||||||||| ||||||||||||||||||| || || |||||| ||| |||||||||| |||||||    
T  33922842 tgacattgatgatattagtgtattctagatgagagagaatgataaatgaatgattaaaataaataatgtagatgagagagagtgattgattaagagagag 33922941  T
Q  252 a 252  Q
    |    
T  33922942 a 33922942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 19824675 - 19824594
Alignment:
Q  172 tattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| ||||||| || ||  |||||||||    
T  19824675 tattttagatgagagagaatgttagatgaatgattaaaataaattatttagatgagagagaatgaatggtttagagagagat 19824594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 150 - 253
Target Start/End: Original strand, 3622180 - 3622283
Alignment:
Q  150 ggtgacattgttaatatcagtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagag 249  Q
    |||||| ||| |||| | ||||||||||||||||| |||||||||||| || |||||||||||||||||||  |||||| | ||| |||| |||| ||||    
T  3622180 ggtgactttggtaattttagtgtattttagatgagtgagaatgatatacgagtgattaaaataaattattttgatgagagaaaattattggttagaagag 3622279  T
Q  250 agat 253  Q
    ||||    
T  3622280 agat 3622283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 27672816 - 27672769
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27672816 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 27672769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 22029850 - 22029931
Alignment:
Q  172 tattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||| |  ||||||||||||||||||||||||  |||||||||||| | |||||  |||||||||    
T  22029850 tattttagatgagagagaatgttggatgaatgattaaaataaattatttggatgagatagaataaatgatttagagagagat 22029931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 34928884 - 34928831
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatga 226  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  34928884 attttagatgagagagaatgataaatgaatgattaaaataaattatttagatga 34928831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 33953223 - 33953151
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattga 240  Q
    ||||||||||||||||||||||||| |  |||||| |||||||||||||||||| |||||| ||||| |||||    
T  33953223 agtgtattttagatgagagagaatggtggatgaataattaaaataaattatttagatgagagagaattattga 33953151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 7758214 - 7758261
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7758214 accggagggagaggcagagcggcgacatcccaaagaggggtagaggtc 7758261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 14281809 - 14281891
Alignment:
Q  172 tattttagatgagagagaatgatatatgaatg-attaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||| || |   |||||||||||||| |||| ||||    
T  14281809 tattttagatgagagagaatgatagatgaatgtattaaaataaattatttagattaacgagaatgattgattatgagaaagat 14281891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 22658917 - 22658864
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatga 226  Q
    ||||||||||| ||||||||||  ||||||||||||||||||||||||||||||    
T  22658917 attttagatgaaagagaatgatgaatgaatgattaaaataaattatttaaatga 22658864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 13961 - 13914
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||    
T  13961 accggagggagaggcagagcggccacatcccaaagaatggtagaggtc 13914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 8579670 - 8579623
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||    
T  8579670 accgaagggagaggcagagcggccacatcccagagaggggtagaggtc 8579623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 253
Target Start/End: Original strand, 17250466 - 17250548
Alignment:
Q  170 tgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||||||| ||||| ||||||||||| ||||||||||||| ||||||||||  |||||| | ||||||||||||| | ||||||    
T  17250466 tgtatttt-gatgaaagagaatgatagatgaatgattaaagtaaattattttgatgagagaaaatgattgattagaatagagat 17250548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 19040264 - 19040217
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||    
T  19040264 accgcagggagaggcagggcggccacatcccaaagaggggtagaggtc 19040217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 5197850 - 5197895
Alignment:
Q  23 cggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||    
T  5197850 cggagggagaggcaaagcggccacatcccaaataggggtagaggtc 5197895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 17138608 - 17138535
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgat 241  Q
    |||||||||||||| |||||||||||   || ||||||| |||||||||||||| |||||| |||||| |||||    
T  17138608 agtgtattttagattagagagaatgaccgataaatgattgaaataaattatttatatgagaaagaatgtttgat 17138535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 3622323 - 3622375
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattattt 220  Q
    ||||||||||| |||||||||||||||||| || | |||||||||||||||||    
T  3622323 agtgtattttatatgagagagaatgatatacgagtaattaaaataaattattt 3622375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 28240987 - 28240940
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| ||||||||||||||||||||||||||||    
T  28240987 accgcagggagagacagagtggccacatcccaaagaggggtagaggtc 28240940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 28877551 - 28877598
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||||||||| |||||||||||||| |||||||||||||    
T  28877551 accgcagggagaggcagagtggccacatcccaaaaaggggtagaggtc 28877598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 9956694 - 9956624
Alignment:
Q  176 ttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattagga 246  Q
    ||||||||||||  |||||| |||| |||||||||||||||||||  |||||| ||||| |||| ||||||    
T  9956694 ttagatgagagaagatgataaatgagtgattaaaataaattattttgatgagagagaattattggttagga 9956624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 18623597 - 18623635
Alignment:
Q  183 agagagaatgatatatgaatgattaaaataaattattta 221  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  18623597 agagagaatgatagatgaatgattaaaataaattattta 18623635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 2651688 - 2651651
Alignment:
Q  197 atgaatgattaaaataaattatttaaatgagatagaat 234  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  2651688 atgaatgattaaaataaattatttagatgagatagaat 2651651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 168 - 253
Target Start/End: Original strand, 8230774 - 8230858
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||||||||||||||| ||||| ||||   | |||||||||||||||||||||  |||||| | | | ||||||||||||||||||    
T  8230774 agtgtattttagatgaaagagagtgatgattaaatgattaaaataaattattttgatgaga-aaagttattgattaggagagagat 8230858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 42321148 - 42321087
Alignment:
Q  175 tttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatga 236  Q
    |||| ||||||||||||| || ||||||| |||||||| |||||||| |||||| |||||||    
T  42321148 tttatatgagagagaatgttagatgaatgtttaaaatatattatttagatgagagagaatga 42321087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 14151943 - 14151991
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattattta 221  Q
    ||||||||||||||| ||| ||  |||||||||||||||||||||||||    
T  14151943 attttagatgagagataataatgaatgaatgattaaaataaattattta 14151991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 18267856 - 18267932
Alignment:
Q  174 ttttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagaga 250  Q
    |||||||| ||||||||||||  || ||| ||||||||||||||||||||| | | | ||||| |||||| ||||||    
T  18267856 ttttagataagagagaatgatggattaataattaaaataaattatttaaataaaagataatgaatgattaagagaga 18267932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 19228111 - 19228064
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||| ||||||||| ||||| ||||||||||||||||| |||||||    
T  19228111 accggaaggagaggcaaagcgggcacatcccaaagaggggaagaggtc 19228064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 30706011 - 30706058
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| ||| ||||||||||| ||||| |||||||||||||||||||||    
T  30706011 accgcaggaagaggcagagcagccacttcccaaagaggggtagaggtc 30706058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 31882660 - 31882592
Alignment:
Q  172 tattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgatt 242  Q
    ||||||||||||||||  ||| |  |||||| |||||||||||||||||| |||||| ||||||| |||||    
T  31882660 tattttagatgagaga--atgtttgatgaataattaaaataaattatttagatgagagagaatgaatgatt 31882592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 32821988 - 32821929
Alignment:
Q  191 tgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagaga 250  Q
    ||||| || ||||||||||||||||||||| ||||| | |||| ||||||||| ||||||    
T  32821988 tgatagattaatgattaaaataaattattttaatgataaagaaagattgattaagagaga 32821929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 42941651 - 42941605
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggt 67  Q
    |||||| ||||||||| ||||| ||||||||||||||||| ||||||    
T  42941651 accggaaggagaggcaaagcgggcacatcccaaagaggggaagaggt 42941605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 14139452 - 14139398
Alignment:
Q  172 tattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgaga 228  Q
    ||||||||||||||||  || ||| || |||||||||||||||||||| ||||||||    
T  14139452 tattttagatgagaga--ataataaataaatgattaaaataaattattaaaatgaga 14139398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 253
Target Start/End: Complemental strand, 25468241 - 25468156
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||| |||  |||||  | |||||||||||| || |||  |||||| ||||| ||| |||| |||||||||    
T  25468241 agtgtattttagatgagagggaacaatatactagtgattaaaataatttctttttatgagagagaattattaattatgagagagat 25468156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 27554914 - 27554979
Alignment:
Q  163 atatcagtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgaga 228  Q
    |||| ||| |||||||||||||||| ||||||  || ||| ||||||||| |||||||| ||||||    
T  27554914 atataagtttattttagatgagagaaaatgatgaataaataattaaaatagattatttagatgaga 27554979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 41006714 - 41006638
Alignment:
Q  163 atatcagtgtattttagatgagagagaatgatatatgaatgattaaaataaatt-atttaaatgagatagaatgattg 239  Q
    |||| |||||||||| ||||||| |||||  | ||| ||||||||||||||||| |||| ||||||| ||||||||||    
T  41006714 atattagtgtatttt-gatgagaaagaatattttataaatgattaaaataaattaattttaatgagagagaatgattg 41006638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 10372037 - 10372073
Alignment:
Q  199 gaatgattaaaataaattatttaaatgagatagaatg 235  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  10372037 gaatgattaaaataaattatttaaataagagagaatg 10372073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 22653570 - 22653522
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattattta 221  Q
    ||||||||||||| ||||| ||  |||||||||||||||| ||||||||    
T  22653570 attttagatgagaaagaataatggatgaatgattaaaatagattattta 22653522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 40624084 - 40624044
Alignment:
Q  28 ggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  40624084 ggagaggcaaagggggcacatcccaaagaggggtagaggtc 40624044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 168 - 268
Target Start/End: Complemental strand, 26847235 - 26847135
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagatgtcaccaatgtcat 267  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||| || ||| | ||| ||||||||  |||||||| | | |||||||||    
T  26847235 agtgtattttagatgagagagaatgatagatgaatgagtaaaataaattatttagataagagataataattgattaaaagagagatataaacaatgtcat 26847136  T
Q  268 c 268  Q
    |    
T  26847135 c 26847135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 457744 - 457684
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgaga 228  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||    
T  457744 agtgtattttagatgagagagaatgatggatgaatgattaaaataaattatttagatgaga 457684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 24226150 - 24226071
Alignment:
Q  171 gtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagaga 250  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||  |||| | ||||| |||| ||||||||||    
T  24226150 gtattttagatgagagaaaatgatagatgaatgattaaaataaattattttgatgacagagaattattggttaggagaga 24226071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 168 - 253
Target Start/End: Complemental strand, 6793589 - 6793504
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||||| |||| |||| |||||||||||||||||||  |||||| | ||| |||| |||||| ||||||    
T  6793589 agtgtattttagatgagagagaacgatagatgagtgattaaaataaattattttgatgagagataattattggttaggatagagat 6793504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 168 - 253
Target Start/End: Complemental strand, 8585797 - 8585712
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||||| ||||| |||| | ||| |||| ||||| |||||||||    
T  8585797 agtgtattttagatgaaagagaatgatggatgaatgattaaaataaatgatttagatgaaagagagtgatcgattaagagagagat 8585712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 28963586 - 28963668
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagaga 250  Q
    |||| |||||||||||||||||||||   ||||||||||||||||| ||||||  |||||| |||||||| ||||| ||||||    
T  28963586 agtgcattttagatgagagagaatgaagaatgaatgattaaaataacttattttgatgagagagaatgatcgattaagagaga 28963668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 512838 - 512773
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaa 233  Q
    |||||||||||||||||||||||| ||| |||| |||||||||||||||||||  |||||| ||||    
T  512838 agtgtattttagatgagagagaataatagatgagtgattaaaataaattattttgatgagagagaa 512773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 27617641 - 27617688
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||    
T  27617641 accgtagggagaggcagggcggccacatcccaaagaggggtagaggtc 27617688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 28067378 - 28067322
Alignment:
Q  197 atgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||||||  |||||| |||||||||| |||| ||||||||    
T  28067378 atgaatgattaaaataaattattttgatgagagagaatgattggttagaagagagat 28067322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 253
Target Start/End: Complemental strand, 6139406 - 6139328
Alignment:
Q  175 tttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||| ||||||||||||| || |  |||||||||||||||||||||| |||||| ||||||| || |||  ||||||||    
T  6139406 tttaaatgagagagaatgttagacaaatgattaaaataaattatttagatgagagagaatgaatggttaaaagagagat 6139328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 28729977 - 28730027
Alignment:
Q  170 tgtattttagatgagagagaatgatatatgaatgattaaaataaattattt 220  Q
    |||||||||||||||||||||||||| || | || ||||||||||||||||    
T  28729977 tgtattttagatgagagagaatgatagatcagtgcttaaaataaattattt 28730027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 9549459 - 9549393
Alignment:
Q  174 ttttagatgagagagaatg----atatatgaatgattaaaataaattatttaaatgagatagaatga 236  Q
    |||||||||||||||||||    ||  |||||||||||||||||||||||||||| ||| |||||||    
T  9549459 ttttagatgagagagaatggtgaatgaatgaatgattaaaataaattatttaaattagagagaatga 9549393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 4870584 - 4870529
Alignment:
Q  184 gagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattg 239  Q
    |||||||||||  |||||||||||| ||| ||||||||||||||| | ||||||||    
T  4870584 gagagaatgattgatgaatgattaagatagattatttaaatgagagaaaatgattg 4870529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 6202074 - 6202121
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  6202074 accgcagggagagacagagtgcccacatcccaaagaggggtagaggtc 6202121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 11689041 - 11689088
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  11689041 accgcagggagagacagagtgcccacatcccaaagaggggtagaggtc 11689088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 22302106 - 22302153
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  22302106 accgcagggagagacagagtgcccacatcccaaagaggggtagaggtc 22302153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 30828799 - 30828752
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  30828799 accgcagggagagacagagtgcccacatcccaaagaggggtagaggtc 30828752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 32267018 - 32267065
Alignment:
Q  172 tattttagatgagagagaatgatatatgaatgattaaaataaattatt 219  Q
    ||||||||||||  |||||||||| || ||||||||||||||||||||    
T  32267018 tattttagatgaatgagaatgatagattaatgattaaaataaattatt 32267065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 167182 - 167236
Alignment:
Q  172 tattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatga 226  Q
    |||||||||||||||| |||| |   |||| ||||||||||||||||||||||||    
T  167182 tattttagatgagagataatgttgattgaaagattaaaataaattatttaaatga 167236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 7506696 - 7506642
Alignment:
Q  199 gaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||||| |||||| ||||||| |  ||| |||||||||    
T  7506696 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagat 7506642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 9928325 - 9928271
Alignment:
Q  199 gaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||||| |||||| ||||||| |  ||| |||||||||    
T  9928325 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagat 9928271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 6319726 - 6319681
Alignment:
Q  23 cggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| ||||||||| ||||| ||||||||||||||||| |||||||    
T  6319726 cggaaggagaggcaaagcgggcacatcccaaagaggggaagaggtc 6319681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 22469763 - 22469726
Alignment:
Q  199 gaatgattaaaataaattatttaaatgagatagaatga 236  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  22469763 gaatgattaaaataaattatttagatgagagagaatga 22469726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 3037376 - 3037452
Alignment:
Q  174 ttttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagaga 250  Q
    |||| ||||||||| |||| |  |||||||||||||||||||| |||| |||| | ||||||| || ||| ||||||    
T  3037376 tttttgatgagagaaaatgttggatgaatgattaaaataaattttttagatgaaagagaatgaatggttaagagaga 3037452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 31176043 - 31175991
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattattt 220  Q
    |||||||||||||||||| ||||||||| | |  |||||||| ||||||||||    
T  31176043 agtgtattttagatgagaaagaatgatagacgtgtgattaaattaaattattt 31175991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 9e-19; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 10688698 - 10688618
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||| |||||| ||||||| |  ||| |||||||||    
T  10688698 attttagatgagagagaatgatgaatgaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagat 10688618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 2274088 - 2274041
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2274088 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 2274041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 36128506 - 36128553
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36128506 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 36128553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 50963866 - 50963913
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50963866 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 50963913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 46348393 - 46348473
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||||  |||||| ||||| ||||| ||||||||||||| ||||||| |||||| |||| ||||    
T  46348393 attttagatgagagagaatgatgaatgaattattaagataaactatttaaatgagagagaatgaatgattaagagatagat 46348473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 597809 - 597856
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  597809 accggagggagaggcagagcgcccacatcccaaagaggggtagaggtc 597856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 3976615 - 3976662
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3976615 accggagggagaggcagagtggccacatcccaaagaggggtagaggtc 3976662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 41613242 - 41613289
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  41613242 accggagggagaggcaaagcggccacatcccaaagaggggtagaggtc 41613289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 42166076 - 42166119
Alignment:
Q  25 gagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42166076 gagggagaggcagagcggccacatcccaaagaggggtagaggtc 42166119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 47073371 - 47073324
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  47073371 accggagggagaggcagagcagccacatcccaaagaggggtagaggtc 47073324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 52390553 - 52390506
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  52390553 accggagggagaagcagagcggccacatcccaaagaggggtagaggtc 52390506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 50216099 - 50216054
Alignment:
Q  23 cggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  50216099 cggagggacaggcagagcggccacatcccaaagaggggtagaggtc 50216054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 17567260 - 17567213
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||    
T  17567260 accggagggagagtcaaagcggccacatcccaaagaggggtagaggtc 17567213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 29009785 - 29009832
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  29009785 accgcagggagagacagagcggccacatcccaaagaggggtagaggtc 29009832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 16278864 - 16278782
Alignment:
Q  171 gtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||| ||| ||||||||  |||||| ||||||||||||||||||  ||| | ||||| |||||||| |||||||||    
T  16278864 gtattttagataagaaagaatgatggatgaataattaaaataaattatttaggtgataaagaataattgattaagagagagat 16278782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 20345117 - 20345075
Alignment:
Q  197 atgaatgattaaaataaattatttaaatgagatagaatgattg 239  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  20345117 atgaatgattaaaataaattatttaaatgagagagaatgattg 20345075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 34305879 - 34305830
Alignment:
Q  171 gtattttagatgagagagaatgatatatgaatgattaaaataaattattt 220  Q
    ||||||||||||||||||||||||| |||| ||||||||||| |||||||    
T  34305879 gtattttagatgagagagaatgatagatgagtgattaaaatatattattt 34305830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 44230608 - 44230657
Alignment:
Q  19 caaccggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||||||||| ||||| ||||||||||||||||| |||||||    
T  44230608 caaccggagggagaggcaaagcgggcacatcccaaagaggggaagaggtc 44230657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 16611995 - 16612038
Alignment:
Q  25 gagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| ||||||||||||||||||||||||||||||||| |||||    
T  16611995 gaggcagaggcagagcggccacatcccaaagaggggtacaggtc 16612038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 20351517 - 20351560
Alignment:
Q  25 gagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||| ||||||||||||||||||||||| |||||||    
T  20351517 gagggagaggcaaagcggccacatcccaaagaggggaagaggtc 20351560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 22047258 - 22047215
Alignment:
Q  25 gagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| ||||||||||||||||||||||||||||||||| |||||    
T  22047258 gaggcagaggcagagcggccacatcccaaagaggggtacaggtc 22047215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 39485471 - 39485526
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgaga 228  Q
    |||||||||||||||||| | |  ||||||||||||||||||||||||| ||||||    
T  39485471 attttagatgagagagaaggttggatgaatgattaaaataaattatttagatgaga 39485526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 47548926 - 47548871
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgaga 228  Q
    |||||||||||||||||||| |  ||| ||||||||||||||||||||| ||||||    
T  47548926 attttagatgagagagaatgttgaatggatgattaaaataaattatttagatgaga 47548871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 49268433 - 49268386
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||||||| ||||| ||||||||||| |||||||||||||    
T  49268433 accggagggagaggcaaagcggtcacatcccaaacaggggtagaggtc 49268386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 7654639 - 7654571
Alignment:
Q  179 gatgagagagaatgatatatgaatgattaaaataaatta-tttaaatgagatagaatgattgattagga 246  Q
    |||||||||||||| || |||||||||||| ||| |||| |||  |||||| |||||||||||||||||    
T  7654639 gatgagagagaatggtagatgaatgattaatatatattatttttcatgagagagaatgattgattagga 7654571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 16013504 - 16013579
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgatta 243  Q
    |||||||||||||| ||||||||  ||  ||||||||||||| ||||||||||| |||| |  |||| ||||||||    
T  16013504 agtgtattttagatcagagagaacaatggatgaatgattaaagtaaattatttagatgacaaggaattattgatta 16013579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 20917181 - 20917134
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||| ||||||||| ||||| ||||||||||||||||| |||||||    
T  20917181 accggaaggagaggcaaagcgggcacatcccaaagaggggaagaggtc 20917134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 20926143 - 20926096
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||| ||||||||| ||||| ||||||||||||||||| |||||||    
T  20926143 accggaaggagaggcaaagcgggcacatcccaaagaggggaagaggtc 20926096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 34046301 - 34046348
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  34046301 accgcagggagagacagagtgcccacatcccaaagaggggtagaggtc 34046348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 42903337 - 42903290
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  42903337 accgcagggagagacagagtgcccacatcccaaagaggggtagaggtc 42903290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 49143610 - 49143563
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  49143610 accgcagggagagacagagtgcccacatcccaaagaggggtagaggtc 49143563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 50479954 - 50479907
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  50479954 accgcagggagagacagagtgcccacatcccaaagaggggtagaggtc 50479907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 4037205 - 4037151
Alignment:
Q  199 gaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||||| |||||| ||||||| |  ||| |||||||||    
T  4037205 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagat 4037151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 11233570 - 11233516
Alignment:
Q  199 gaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||||| |||||| ||||||| |  ||| |||||||||    
T  11233570 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagat 11233516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 49279553 - 49279499
Alignment:
Q  199 gaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||||| |||||| ||||||| |  ||| |||||||||    
T  49279553 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagat 49279499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 30240939 - 30240878
Alignment:
Q  192 gatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||| ||| ||||||||||||||||||||  |||||| ||| | |||||||| |||||||||    
T  30240939 gataaatggatgattaaaataaattattttgatgagagagattaattgattaagagagagat 30240878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 39488481 - 39488562
Alignment:
Q  172 tattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||||||| |||  || ||||||  |||||| ||||||||||||||||||||  ||| | |||||||||||| || ||||||    
T  39488481 tattttaggtgaatgaaaatgatgaatgaataattaaaataaattatttaaaaaagagaaaatgattgattaagatagagat 39488562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 39994255 - 39994218
Alignment:
Q  199 gaatgattaaaataaattatttaaatgagatagaatga 236  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  39994255 gaatgattaaaataaattatttagatgagagagaatga 39994218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 54387055 - 54387096
Alignment:
Q  27 gggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||| ||||| | ||||||||||||||||||||||||||    
T  54387055 gggagagacagagtgcccacatcccaaagaggggtagaggtc 54387096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 132187 - 132151
Alignment:
Q  178 agatgagagagaatgatatatgaatgattaaaataaa 214  Q
    |||||||||||||||||  ||||||||||||||||||    
T  132187 agatgagagagaatgatgaatgaatgattaaaataaa 132151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 13477687 - 13477767
Alignment:
Q  170 tgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagaga 250  Q
    |||||||| ||| ||||||||||||  ||||||||||||||||| |||||||||||||| ||| |||||||||| ||||||    
T  13477687 tgtattttggataagagagaatgatgaatgaatgattaaaataatttatttaaatgagagagactgattgattaagagaga 13477767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 23396023 - 23395943
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||| | ||||||| |  ||| |||||||||    
T  23396023 attttagatgagagagaatgataaatgaatgattaaaataaattatttagatgatagagaatgagttgttaagagagagat 23395943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 32832594 - 32832674
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||||||||||||||||||| |  ||||||||||||||||||||||||| |||||| ||||||| || ||| |||||||||    
T  32832594 attttagatgagagagaatgttggatgaatgattaaaataaattatttagatgagagagaatgaatggttaagagagagat 32832674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 6752075 - 6752130
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgaga 228  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  6752075 attttagatgagagagaatgataaatgaatgattaaaataaattatttagatgaga 6752130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 28469549 - 28469596
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28469549 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 28469596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 41069674 - 41069737
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatga 236  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||| |||||| |||||||    
T  41069674 attttagatgagagagaatgatgaatgaatgattaaaataaattatttagatgagagagaatga 41069737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 45429499 - 45429546
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45429499 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 45429546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 39729076 - 39729015
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaat 234  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||| |||||| |||||    
T  39729076 attttagatgagagagaatgatgaatgaatgattaaaataaattatttagatgagagagaat 39729015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 172 - 273
Target Start/End: Original strand, 40204727 - 40204828
Alignment:
Q  172 tattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagatgtcaccaatgtcatccaa 271  Q
    ||||||| |||||||||||||||| |||||| ||||||||||||||||||  ||| | ||||| |||||||| ||| ||||| | | |||||||||| ||    
T  40204727 tattttacatgagagagaatgatagatgaattattaaaataaattatttaggtgaaagagaataattgattaagagggagatataaacaatgtcatcaaa 40204826  T
Q  272 at 273  Q
    ||    
T  40204827 at 40204828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 28640136 - 28640188
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattattt 220  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  28640136 agtgtattttagatgaaagagaatgatagatgaatgattaaaataaattattt 28640188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 10828167 - 10828120
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  10828167 accggagggagaggcagagcggtcacatcccaaagaggggtagaggtc 10828120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 36562752 - 36562821
Alignment:
Q  184 gagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||||||||||  |||||||| |||||||||||||||| |||||| ||||||| |||||| |||||||||    
T  36562752 gagagaatgatgaatgaatgagtaaaataaattatttagatgagagagaatgaatgattaagagagagat 36562821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 11226236 - 11226156
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||||| ||||||||||||||   ||||||||||||||||||||||||| |||||| ||||||| |  ||| |||||||||    
T  11226236 attttaaatgagagagaatgacgaatgaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagat 11226156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 17421437 - 17421484
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||    
T  17421437 accgcagggagaggcagggcggccacatcccaaagaggggtagaggtc 17421484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 29400762 - 29400715
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||    
T  29400762 accggagggagaggcaaagcagccacatcccaaagaggggtagaggtc 29400715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 36655551 - 36655508
Alignment:
Q  25 gagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  36655551 gagggagaggcaaagcggccacatcccaaagaggggtagaggtc 36655508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 39948509 - 39948556
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||    
T  39948509 accggagggaaaggcagagcggccacatcccaaagaggggtaaaggtc 39948556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 1208690 - 1208626
Alignment:
Q  189 aatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||| |||| ||||||||||||||||||| ||||||| ||||| |||| ||| |||||||||    
T  1208690 aatgatagatgagtgattaaaataaattattttaatgagagagaattattggttaagagagagat 1208626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 15832043 - 15832090
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| ||||||||||||||||||||||||||||    
T  15832043 accgcagggagagacagagtggccacatcccaaagaggggtagaggtc 15832090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 38529879 - 38529934
Alignment:
Q  171 gtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatga 226  Q
    ||||| ||||||||||| ||| || |||||||||||||||||||||||||| ||||    
T  38529879 gtattctagatgagagataataatttatgaatgattaaaataaattatttagatga 38529934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 45136470 - 45136423
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||| || |||| ||||||||||||||||||||||||||    
T  45136470 accggagggagagacaaagcgaccacatcccaaagaggggtagaggtc 45136423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 8209369 - 8209313
Alignment:
Q  187 agaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgatta 243  Q
    |||||| || ||||||||||||||||||||||||  |||||| ||||| ||||||||    
T  8209369 agaatggtaaatgaatgattaaaataaattattttgatgagagagaattattgatta 8209313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 3939887 - 3939840
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  3939887 accgcagggagagacagagtgcccacatcccaaagaggggtagaggtc 3939840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 30496094 - 30496047
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  30496094 accgcagggagagacagagtgcccacatcccaaagaggggtagaggtc 30496047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 43979445 - 43979492
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  43979445 accgcagggagagacagagtgcccacatcccaaagaggggtagaggtc 43979492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 3496805 - 3496859
Alignment:
Q  199 gaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||||| |||||| ||||||| |  ||| |||||||||    
T  3496805 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagat 3496859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 16401124 - 16401194
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgatta 243  Q
    ||||||||||||| |||||| |  || ||| |||||||||||||||||| |||||| | ||| ||||||||    
T  16401124 attttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgatta 16401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 19037073 - 19037127
Alignment:
Q  199 gaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||||| |||||| ||||||| |  ||| |||||||||    
T  19037073 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagat 19037127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 21836066 - 21835996
Alignment:
Q  183 agagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||| |||| |||||||||||||||||||  |||||  | ||| |||| |||||| ||||||    
T  21836066 agagagaatgatagatgagtgattaaaataaattattttgatgaggaaaaattattggttaggaaagagat 21835996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 38034608 - 38034646
Alignment:
Q  205 ttaaaataaattatttaaatgagatagaatgattgatta 243  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  38034608 ttaaaataaattatttaaacgagagagaatgattgatta 38034646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 253
Target Start/End: Original strand, 13772780 - 13772865
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||||||||||||||| | ||||| ||| |||| |||||||| ||||| ||||  |||||| | ||| |||  |||||||||||||    
T  13772780 agtgtattttagatgaaaaagaataatagatgagtgattaaattaaatcattttgatgagagaaaattattcgttaggagagagat 13772865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 43538878 - 43538838
Alignment:
Q  28 ggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||| ||||| | ||||||||||||||||||||||||||    
T  43538878 ggagagacagagtgcccacatcccaaagaggggtagaggtc 43538838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 48)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 19495122 - 19495220
Alignment:
Q  150 ggtgacattgttaatatcagtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggaga 248  Q
    ||||| |||| |||||| |||||||||||||| | | ||||||||| |||||||||||||||| ||| |||| |||| |||||||| ||||||| ||||    
T  19495122 ggtgatattggtaatattagtgtattttagataaaaaagaatgataaatgaatgattaaaatatattctttagatgaaatagaatgtttgattaagaga 19495220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 32204837 - 32204763
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgatt 242  Q
    ||||||||||||||||||||  |||||| || |||||||||||||||||||||| |||||| | |||||||||||    
T  32204837 agtgtattttagatgagagaagatgatagataaatgattaaaataaattatttatatgagagataatgattgatt 32204763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 685001 - 685082
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagatg 254  Q
    ||||||||||||| |||||  || ||||| ||||||||||||||||||| |||||||| ||||||||||||  |||||||||    
T  685001 attttagatgagaaagaatattagatgaaagattaaaataaattatttagatgagataaaatgattgattaaaagagagatg 685082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 42507241 - 42507192
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtcag 70  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42507241 accgcagggagaggcagagcggccacatcccaaagaggggtagaggtcag 42507192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 15073432 - 15073385
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  15073432 accgcagggagaggcagagcggccacatcccaaagaggggtagaggtc 15073385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 10517808 - 10517850
Alignment:
Q  26 agggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10517808 agggagaggcagagcggccacatcccaaagaggggtagaggtc 10517850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 33957481 - 33957543
Alignment:
Q  172 tattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatga 236  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||  ||||||||| |||||||    
T  33957481 tattttagatgagaaagaatgatagatgaatgattaaaataaatta--taaatgagaaagaatga 33957543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 253
Target Start/End: Original strand, 43368466 - 43368567
Alignment:
Q  152 tgacattgttaatatcagtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagag 251  Q
    |||||||| | |||| ||| |||||||  | ||||||||||||  ||||||||||||||||||||||||| ||||||  |||| |||||||  |||||||    
T  43368466 tgacattgatgatattagtatattttatgtaagagagaatgatggatgaatgattaaaataaattatttagatgagaatgaattattgatttagagagag 43368565  T
Q  252 at 253  Q
    ||    
T  43368566 at 43368567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 2628437 - 2628517
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||||  || ||||||||||||||| |||||| |||||| ||||||| |  ||| |||||||||    
T  2628437 attttagatgagagagaatgatgaataaatgattaaaataaactatttagatgagagagaatgagttgttaagagagagat 2628517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 16677937 - 16677984
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||    
T  16677937 accggagggagaggcaaagcggccacatcccaaagaggggaagaggtc 16677984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 17652173 - 17652220
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||    
T  17652173 accggagggagaggcaaagcggccacatcccaaagaggggaagaggtc 17652220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 19798181 - 19798228
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||    
T  19798181 accggagggagaggcaaagcggccacatcccaaagaggggaagaggtc 19798228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 32279295 - 32279350
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgaga 228  Q
    ||||||||||||||| ||||||  |||||| |||||||||||||||||||||||||    
T  32279295 attttagatgagagaaaatgatgaatgaataattaaaataaattatttaaatgaga 32279350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 34739276 - 34739319
Alignment:
Q  25 gagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  34739276 gagggagaggcagagcggccacattccaaagaggggtagaggtc 34739319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 40591105 - 40591010
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagatgtcaccaatgtcatc 268  Q
    ||||||||||| | |||||| || || |||||||||||||||||||||| |||| | ||||| ||||||||  |||||||| | | ||||||||||    
T  40591105 attttagatgaaatagaatgttagataaatgattaaaataaattatttagatgaaagagaataattgattaaaagagagatatgaacaatgtcatc 40591010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 46739677 - 46739630
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  46739677 accggagggagagacagagcggccacatcccaaagcggggtagaggtc 46739630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 37685191 - 37685269
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||||||| ||||||||||| |  ||||||||||||||||||||||||| |||||  ||||||| || ||| |||||||||    
T  37685191 attttagacgagagagaatgttggatgaatgattaaaataaattatttagatgag--agaatgaatggttaagagagagat 37685269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 22715812 - 22715864
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattattt 220  Q
    |||||||||||||||| ||||| ||||| || |||||||||||||||||||||    
T  22715812 agtgtattttagatgaaagagagtgatagataaatgattaaaataaattattt 22715864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 5540739 - 5540692
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||||||||| | || ||||||||||||||||||||||||||||    
T  5540739 accggagggagaggaaaagtggccacatcccaaagaggggtagaggtc 5540692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 17835985 - 17836032
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||||| |||||||||||| ||||||| ||||||||||||||||||    
T  17835985 accggaggaagaggcagagcgaccacatcgcaaagaggggtagaggtc 17836032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 41851266 - 41851313
Alignment:
Q  196 tatgaatgattaaaataaattatttaaatgagatagaatgattgatta 243  Q
    |||||||||||||||||||||||||| || ||| ||||||||||||||    
T  41851266 tatgaatgattaaaataaattatttacattagagagaatgattgatta 41851313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 42691095 - 42691150
Alignment:
Q  198 tgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||||||||||||||||||||||  |||||| ||||| ||| ||||||||||||||    
T  42691095 tgaatgattaaaataaattattttgatgagagagaattattaattaggagagagat 42691150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 42971638 - 42971705
Alignment:
Q  167 cagtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaat 234  Q
    |||| ||||||||||||||||||||| |    ||||||||||||||||||||||| |||||| |||||    
T  42971638 cagtttattttagatgagagagaatgttgggcgaatgattaaaataaattatttagatgagagagaat 42971705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 43279302 - 43279244
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgag 227  Q
    |||||||||| ||||  ||||||||||| |||||||||||||||||||||||| ||||||    
T  43279302 agtgtatttt-gatggaagagaatgatagatgaatgattaaaataaattattttaatgag 43279244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 47777159 - 47777206
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||| |||||||| |||||||||||||||||||| ||||||||||    
T  47777159 accggagcgagaggcaaagcggccacatcccaaagagaggtagaggtc 47777206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 9488770 - 9488819
Alignment:
Q  173 attttagatgagag-agaatgatatatgaatgattaaaataaattattta 221  Q
    |||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  9488770 attttagatgagaggagaatgatgaatgaatgattaaaataaattattta 9488819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 11369056 - 11369104
Alignment:
Q  173 attttagatgagagagaatgatatatgaatgattaaaataaattattta 221  Q
    |||||||||||||||||||| |  || ||||||||||||||||||||||    
T  11369056 attttagatgagagagaatgttggataaatgattaaaataaattattta 11369104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 27452779 - 27452739
Alignment:
Q  25 gagggagaggcagagcggccacatcccaaagaggggtagag 65  Q
    |||||||||||| ||||||||||||||||| ||||||||||    
T  27452779 gagggagaggcaaagcggccacatcccaaaaaggggtagag 27452739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 9370537 - 9370490
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  9370537 accgcagggagagacagagtgcccacatcccaaagaggggtagaggtc 9370490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 9493969 - 9493922
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||| ||||||||| ||||| ||||||||||||||||| |||||||    
T  9493969 accggaaggagaggcaaagcgggcacatcccaaagaggggaagaggtc 9493922  T

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Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 228
Target Start/End: Complemental strand, 15667934 - 15667903
Alignment:
Q  197 atgaatgattaaaataaattatttaaatgaga 228  Q
    ||||||||||||||||||||||||||||||||    
T  15667934 atgaatgattaaaataaattatttaaatgaga 15667903  T

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Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 17462452 - 17462405
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| |||||||| |||||||||||||||||||    
T  17462452 accgcagggagagacagagtggccacattccaaagaggggtagaggtc 17462405  T

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Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 17590762 - 17590809
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| |||||||| |||||||||||||||||||    
T  17590762 accgcagggagagacagagtggccacattccaaagaggggtagaggtc 17590809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 23021259 - 23021211
Alignment:
Q  170 tgtattttagatgagagagaatgatatatgaatgattaaaataaattattt 220  Q
    |||||||||||||||||||  ||||| || |||||||||||||||||||||    
T  23021259 tgtattttagatgagagag--tgatagataaatgattaaaataaattattt 23021211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 41881416 - 41881463
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  41881416 accgcagggagagacagagtgcccacatcccaaagaggggtagaggtc 41881463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 42266449 - 42266488
Alignment:
Q  197 atgaatgattaaaataaattatttaaatgagatagaatga 236  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  42266449 atgaatgattaaaataaattatttaaatgagtgagaatga 42266488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 48404283 - 48404330
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  48404283 accgcagggagagacagagtgcccacatcccaaagaggggtagaggtc 48404330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 16876743 - 16876797
Alignment:
Q  199 gaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||||| |||||| ||||||| |  ||| |||||||||    
T  16876743 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagat 16876797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 18867954 - 18868008
Alignment:
Q  199 gaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||||| |||||| ||||||| |  ||| |||||||||    
T  18867954 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagat 18868008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 23185929 - 23185983
Alignment:
Q  199 gaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||||| |||||| ||||||| |  ||| |||||||||    
T  23185929 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagat 23185983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 27311776 - 27311855
Alignment:
Q  172 tattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    |||||||||||||||||  ||||| ||||||||||||||||| ||||||  ||| || ||||| |||  ||| |||||||||    
T  27311776 tattttagatgagagag--tgatagatgaatgattaaaataatttattttgatgtgagagaattattagttaagagagagat 27311855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 30880455 - 30880517
Alignment:
Q  191 tgatatatgaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||| |||||| |||||||||||||||||  ||| || | |||||||||||| |||||||||    
T  30880455 tgataaatgaattattaaaataaattattttgatgtgagataatgattgattatgagagagat 30880517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 46425344 - 46425398
Alignment:
Q  199 gaatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||||| |||||| ||||||| |  ||| |||||||||    
T  46425344 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagat 46425398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 34328169 - 34328132
Alignment:
Q  199 gaatgattaaaataaattatttaaatgagatagaatga 236  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  34328169 gaatgattaaaataaattatttagatgagagagaatga 34328132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 43375769 - 43375716
Alignment:
Q  200 aatgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||| ||||| ||  ||| ||||||||| ||||||||    
T  43375769 aatgattaaaataaattattttaatgaaatgaaattattgattagaagagagat 43375716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 30061171 - 30061223
Alignment:
Q  201 atgattaaaataaattatttaaatgagatagaatgattgattaggagagagat 253  Q
    ||||||||||||||||||||| |||||| | ||| ||||||||  ||||||||    
T  30061171 atgattaaaataaattatttagatgagagaaaattattgattaacagagagat 30061223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 33748033 - 33747977
Alignment:
Q  186 gagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattgatt 242  Q
    |||||||||  |||||  |||||||||||||||||| || ||| |||||||||||||    
T  33748033 gagaatgatgaatgaacaattaaaataaattatttagataagagagaatgattgatt 33747977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 33884051 - 33884107
Alignment:
Q  180 atgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatga 236  Q
    ||||||||||||| |  ||| || |||||||||||||||||| |||||| |||||||    
T  33884051 atgagagagaatggtggatggataattaaaataaattatttagatgagagagaatga 33884107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 31666 - 31595
Alignment:
Q  168 agtgtattttagatgagagagaatgatatatgaatgattaaaataaattatttaaatgagatagaatgattg 239  Q
    ||||||||||||| |||||||||| ||| ||||||||||||||||||||||||| |||| | | ||||||||    
T  31666 agtgtattttagacgagagagaataatagatgaatgattaaaataaattatttagatgataaaaaatgattg 31595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 14786 - 14739
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    ||||||||||||||||||||| |||||||||||||| || ||||||||    
T  14786 accggagggagaggcagagcgcccacatcccaaagaaggttagaggtc 14739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 11170 - 11217
Alignment:
Q  21 accggagggagaggcagagcggccacatcccaaagaggggtagaggtc 68  Q
    |||||| ||||||||| ||||| ||||||||||||||||| |||||||    
T  11170 accggaaggagaggcaaagcgggcacatcccaaagaggggaagaggtc 11217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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