View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11952_low_7 (Length: 545)
Name: NF11952_low_7
Description: NF11952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11952_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 16 - 482
Target Start/End: Original strand, 38999267 - 38999732
Alignment:
| Q |
16 |
gttttgatgcaggttcatgtgtcattcctcctgatgcggtactcttattcgacgtagagtttgtcagcaaagcatgatttacaactccatggcagtcgaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38999267 |
gttttgatgcaggttcatgtgtcattcctcctgatgcggtactcttattcgacgtagagtttgtcagcaaagcatgatttacaactccatggcagtcgaa |
38999366 |
T |
|
| Q |
116 |
ttaccttccttgaacttccttggagatcagagccgagattactattatgtttccccttttaatttacatgtttgatggctgtgaaattacaatccagctg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38999367 |
ttaccttccttgaacttccttggagatcagagccgagattactattatttttccccttttaatttacatgtttgatggctgtgaaattacaatccagctg |
38999466 |
T |
|
| Q |
216 |
tgaatttacatttttgctctagatcacattgataaaggaacaaaaagctgagaaaattataatgttgagaaataaaactagtatcatcaacttccacatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38999467 |
tgaatttacatttttgctctagatcacattgataaaggaacaaaaagctgagaaaattataacgttgagaaataaaactagtatcatcaacttccacatt |
38999566 |
T |
|
| Q |
316 |
ggatgacattggttatttgtgcataaattaaagaatatgtgctaaatcattgttgctaaatcaattacaagtttaatagatacactgccagtttaaaaaa |
415 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38999567 |
ggatgacattggttatttgtgcataaattaaagaa-atgtgctaaatcattgttgttaaatcaattacaagtttaatagatacactgccagtttaaaaaa |
38999665 |
T |
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| Q |
416 |
ggattaacatttcctatgtgtttataactaataaaattataactaataaaatcaattacaagtataa |
482 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38999666 |
ggattaacatttcctatgtgtttataactaataaaattataactaataaaatcaattacaagtataa |
38999732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 55981866 - 55981766
Alignment:
| Q |
18 |
tttgatgcaggttcatgtgtcattcctcctgatgcggtactcttattcgacgtagagtttgtcagcaaagcatgatttacaactccatggcagtcgaatt |
117 |
Q |
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||||||||||||| |||||||||| ||||| || ||||||||||||||| || |||||||| |||||| |||||||| | |||||||||||| |||| |
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| T |
55981866 |
tttgatgcaggtttatgtgtcatttctccttatttggtactcttattcgatgtggagtttgttggcaaagtatgatttatatgtccatggcagtctaatt |
55981767 |
T |
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| Q |
118 |
a |
118 |
Q |
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| T |
55981766 |
a |
55981766 |
T |
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