View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11952_low_9 (Length: 498)
Name: NF11952_low_9
Description: NF11952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11952_low_9 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 428; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 19 - 498
Target Start/End: Original strand, 2356100 - 2356580
Alignment:
| Q |
19 |
taaagagctcttcaatgtttggaagagtaataacgagtccaactatgtgttagtcgagttgaggcaatggtttattgagttgaatttcaacattgtactt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2356100 |
taaagagctcttcaatgtttggaagagtaataacgagtccaactatgtgttagtcgagttgaggcaatggtttattgagttgaatttcaacattgtactt |
2356199 |
T |
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| Q |
119 |
ccgatgattgttgggaagcggtattttggtgctatgaatgagctcgatgagaaagaagcgcaaaagtgtatcaaagccgtggaggaaatcttgcgtttga |
218 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
2356200 |
ccgatgattgttgggaagcgatattttggtgctatgaatgagctcgatgagaaagaagcgcaaaagtgtatcaaagctgtagaggaaatcttgcgtttga |
2356299 |
T |
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| Q |
219 |
tggggcaattcacggtgggagatgctattccttgtttagaacggtttgattttgacggccatgtgaaagctatgnnnnnnncttctaaggaattggacat |
318 |
Q |
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| T |
2356300 |
tggggcaattcacggtgggagatgctattccttgtttagaacggtttgattttggtggccatgtgaaagctatgaaaaaaacttctaaggaattggacat |
2356399 |
T |
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| Q |
319 |
gattttaaatgaatggttgaaggagcgtcgtaatagaacattgaatgaaaaggttgatcgtgatcaagatttcatggacgcattgctttcattgtttgat |
418 |
Q |
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| T |
2356400 |
gattttaaatgaatggttgaaggagcgtcgtaatagaacattgaatgaaaaggttgatcgtgatcaagatttcatggacgcattgctttcactgtttgat |
2356499 |
T |
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| Q |
419 |
ggaacaacaattgaaggg-tttgatgccgataccacaatcaaagccacgatgttggtatgtatactttcattatattcgct |
498 |
Q |
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| T |
2356500 |
ggaacaacaattgaagggttttgatgccgataccacaatcaaagccacgatgttggtatgtatactttcattatattcgct |
2356580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 381 - 481
Target Start/End: Original strand, 2306465 - 2306565
Alignment:
| Q |
381 |
atcaagatttcatggacgcattgctttcattgtttgatggaacaacaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgtat |
480 |
Q |
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|||||||| ||||||| | |||||||||||| ||||||||||||| || ||||||||||||| ||||||| ||||||||||||||| ||||||||||| |
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| T |
2306465 |
atcaagatatcatggatgtgttgctttcattgcttgatggaacaaccatcgaagggtttgatggtgataccataatcaaagccacgatattggtatgtat |
2306564 |
T |
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| Q |
481 |
a |
481 |
Q |
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| T |
2306565 |
a |
2306565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 381 - 479
Target Start/End: Original strand, 2366767 - 2366865
Alignment:
| Q |
381 |
atcaagatttcatggacgcattgctttcattgtttgatggaacaacaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgta |
479 |
Q |
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| T |
2366767 |
atcaagacttcatggatgtgatgctttcattgtttgatggaacaacaattgaaggatttgattctgataccataatcaaagccacagtattggtatgta |
2366865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 381 - 478
Target Start/End: Original strand, 2362157 - 2362254
Alignment:
| Q |
381 |
atcaagatttcatggacgcattgctttcattgtttgatggaacaacaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgt |
478 |
Q |
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| T |
2362157 |
atcaagacttcatggatgccttgctttcattgcttgatgaaacaccaattgaagggtgtgattctgatactacaatcaaagcgacaatattggtatgt |
2362254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 404 - 480
Target Start/End: Original strand, 2338806 - 2338882
Alignment:
| Q |
404 |
ctttcattgtttgatggaacaacaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgtat |
480 |
Q |
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| T |
2338806 |
ctttcattgcttgatggaacaaccattgaagggtttgacggtgataccataatcaaagccacactattggtatgtat |
2338882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 480
Target Start/End: Original strand, 2349664 - 2349922
Alignment:
| Q |
228 |
tcacggtgggagatgctattccttgtttagaacggtttgattttgacggccatgtgaaagctatgnnnnnnncttctaaggaattggacatgattttaaa |
327 |
Q |
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||||||||||||||| ||||||||||||| || |||||||||||| || ||| |||| || ||| |||||| |||| ||||| |||||| |
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| T |
2349664 |
tcacggtgggagatgttattccttgtttaaaatggtttgattttggtggtcatatgaaggccatggatgaaacttctacggaaatggacgaaattttagg |
2349763 |
T |
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| Q |
328 |
tgaatggttgaaggagcgtcg---taatagaacattgaatgaaaag---gttgatcgtgatcaagatttcatggacgcattgctttcattgtttgatgga |
421 |
Q |
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||| ||||||||||||| ||| ||| || || |||| ||||||| | ||||| |||||||| ||||||| | || |||||||| |||||||| |
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| T |
2349764 |
tgagtggttgaaggagcatcgccataaaaggactttgactgaaaaggctgatgatcaagatcaagacatcatggatgtgttaatttcattgcttgatgga |
2349863 |
T |
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| Q |
422 |
acaacaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgtat |
480 |
Q |
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| ||| || |||||||||||| ||||||| ||||||||| || || ||||||||||| |
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| T |
2349864 |
aaaaccatggaagggtttgattgtgataccataatcaaagcaacaatattggtatgtat |
2349922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 481
Target Start/End: Complemental strand, 5805545 - 5805414
Alignment:
| Q |
353 |
agaacattgaatgaaaaggttgatcgtga---tcaagatttcatggacgcattgctttcattgtttgatggaacaacaattgaagggtttgatgccgata |
449 |
Q |
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||||| |||| ||||||||||||| |||| |||||| |||||||| | || ||||||||| ||||||||||||| ||||||||||||||| |||| |
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| T |
5805545 |
agaactttgagtgaaaaggttgatggtgaagatcaagacttcatggatgtgttactttcattgcttgatggaacaactattgaagggtttgattgtgata |
5805446 |
T |
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| Q |
450 |
ccacaatcaaagccacgatgttggtatgtata |
481 |
Q |
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| T |
5805445 |
ccatgatcaaagccacaatattggtatgtata |
5805414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 381 - 478
Target Start/End: Original strand, 4303928 - 4304025
Alignment:
| Q |
381 |
atcaagatttcatggacgcattgctttcattgtttgatggaacaacaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgt |
478 |
Q |
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| T |
4303928 |
atcaagacttcatggatgtgatgctttcattgcttgatggaacaacaattgaaggatttgattctgataccgtaatcaaagccacaatactggtatgt |
4304025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 285
Target Start/End: Original strand, 4303745 - 4303820
Alignment:
| Q |
210 |
tgcgtttgatggggcaattcacggtgggagatgctattccttgtttagaacggtttgattttgacggccatgtgaa |
285 |
Q |
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| T |
4303745 |
tgcgtttgatgggggtgttcacagtgggagatgctcttccttttttaaaatggtttgattttgggggccatgtgaa |
4303820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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