View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11953_high_12 (Length: 321)
Name: NF11953_high_12
Description: NF11953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11953_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 49 - 305
Target Start/End: Complemental strand, 18990927 - 18990671
Alignment:
| Q |
49 |
aatttctattcttgttttaatcttgtactgttatttatgtcatgactgtatgatagtgattgccaaaagtgttctatttcgtagaagacttggtattttg |
148 |
Q |
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| T |
18990927 |
aattcctatacttggtttaatcttttactattatttatgtcatgacagtatgatagtgattgccaaaagttttctatttcgtagaagacttggtattttg |
18990828 |
T |
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| Q |
149 |
tataaattgccagtattgtttatgtttgatacattatacagaaatctaatattgtcttctctacttgttaatgaacactttatcataatttgaatgaagg |
248 |
Q |
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| T |
18990827 |
tataaattgccagtattgtttatgtttgatacattatacagaaatctaatattgtcttctctacttgttaatgaacactgtatcataatttgaatgaagt |
18990728 |
T |
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| Q |
249 |
gattgtgtgcattggtttattaaattgtttgtactatgttagtaagcatatataatt |
305 |
Q |
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| T |
18990727 |
gattgtgtgcattggtttattaaattgtttgtactatgttagtaagcatatataatt |
18990671 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 44680173 - 44680238
Alignment:
| Q |
229 |
tatcataatttgaatgaa-gggattgtgtgcattggtttattaaattgtttgtactatgttagtaa |
293 |
Q |
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| T |
44680173 |
tatcataatttgaatgaaagggatcatgtgcattggtttattaaattgctcatactatgttagtaa |
44680238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 44689159 - 44689198
Alignment:
| Q |
108 |
ttgccaaaagtgttctatttcgtagaagacttggtatttt |
147 |
Q |
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| T |
44689159 |
ttgccaaaagtgttctctttcctagaagacttggtatttt |
44689198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 44689333 - 44689398
Alignment:
| Q |
229 |
tatcataatttgaatgaa-gggattgtgtgcattggtttattaaattgtttgtactatgttagtaa |
293 |
Q |
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| T |
44689333 |
tatcataatttgaatgaaagggatcctctgcattggtttgttaaattgctcatactatgttagtaa |
44689398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 41979754 - 41979687
Alignment:
| Q |
224 |
cactttatcataatttgaatgaagggattgtgtgcattggtttattaaattgtttgtactatgttagt |
291 |
Q |
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| T |
41979754 |
cactatatcatcatttgaatgaagggatcaggtgcatttgtttattaaattgttcttactatgttagt |
41979687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 182
Target Start/End: Complemental strand, 41984218 - 41984103
Alignment:
| Q |
64 |
tttaatcttgtactgttatttatgtcatgactgtatgatagtgattgccaaaagtgttctatttcgtagaagacttggtattttgtataaattgccagta |
163 |
Q |
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| T |
41984218 |
tttaatcttttactattatttatgtcctggcaatatgacagtgatatccaacactgttctattttccagaagacttggtattttgtttcaattcc---ta |
41984122 |
T |
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| Q |
164 |
ttgtttatgtttgatacat |
182 |
Q |
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| T |
41984121 |
ctgtttatgtttgatacat |
41984103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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