View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11953_high_16 (Length: 277)
Name: NF11953_high_16
Description: NF11953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11953_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 2687151 - 2687386
Alignment:
| Q |
17 |
agatgggacgccaaagaaatcgaagaccttccagattacatgaagttttgcttcaatgcacttcaagatgtcacaaatgaaattgcttatgatattggag |
116 |
Q |
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| T |
2687151 |
agatgggacgccaaagaaatcgaagaccttccagattacatgaagttttgcttcaatgcacttcaagatgtcacaaatgaaattgcttatgatattggag |
2687250 |
T |
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| Q |
117 |
gagaaaagaacttcaattttgtgttacattatctaaagaaaacggtactaataataatatattaatcataaacagtaatttatattttgaaaatgtaaaa |
216 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2687251 |
gagaaaagaacttcaattttgtgttacattacctaaagaaaacggtactaatgttaatatattaatcataaacagtaatttttattttgaaaatgtaaaa |
2687350 |
T |
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| Q |
217 |
a-ccttaaaagatatgaatcattatttgcttatgat |
251 |
Q |
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| T |
2687351 |
atcattgaaagatatgaatcaatatttgcttatgat |
2687386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 2681687 - 2681833
Alignment:
| Q |
17 |
agatgggacgccaaagaaatcgaagaccttccagattacatgaagttttgcttcaatgcacttcaagatgtcacaaatgaaattgcttatgatattggag |
116 |
Q |
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|||||||| |||||||||| ||||| |||| || ||||||||| |||||||||||||| ||||||| |||| || |||||||||||||||||||| || |
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| T |
2681687 |
agatgggatgccaaagaaaatgaagaacttcttgagtacatgaagatttgcttcaatgcagttcaagaagtcagaa-tgaaattgcttatgatattgaag |
2681785 |
T |
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| Q |
117 |
gagaaaagaacttcaattttgtgttacattatctaaagaaaacggtac |
164 |
Q |
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||||||| ||| ||||||||||||||||||| |||||||||||||||| |
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| T |
2681786 |
gagaaaaaaacgtcaattttgtgttacattacctaaagaaaacggtac |
2681833 |
T |
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