View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11953_high_2 (Length: 672)

Name: NF11953_high_2
Description: NF11953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11953_high_2
NF11953_high_2
[»] chr2 (4 HSPs)
chr2 (1-654)||(41993103-41993766)
chr2 (229-297)||(41992697-41992764)
chr2 (343-430)||(42428156-42428243)
chr2 (221-294)||(33361073-33361146)
[»] chr7 (6 HSPs)
chr7 (1-281)||(32492960-32493239)
chr7 (229-298)||(32492581-32492650)
chr7 (235-294)||(22492485-22492544)
chr7 (343-413)||(15011359-15011429)
chr7 (208-294)||(45431085-45431171)
chr7 (244-294)||(48204965-48205015)
[»] chr4 (8 HSPs)
chr4 (221-294)||(52237661-52237734)
chr4 (221-294)||(52238279-52238352)
chr4 (221-294)||(55633580-55633653)
chr4 (221-296)||(48957425-48957500)
chr4 (219-269)||(55634240-55634290)
chr4 (345-413)||(23860503-23860571)
chr4 (251-288)||(53328273-53328310)
chr4 (252-288)||(48956669-48956705)
[»] chr8 (7 HSPs)
chr8 (243-294)||(38443060-38443111)
chr8 (229-290)||(17626326-17626387)
chr8 (221-296)||(3565851-3565926)
chr8 (46-108)||(3566208-3566270)
chr8 (221-290)||(17625664-17625733)
chr8 (243-281)||(10911005-10911043)
chr8 (350-427)||(5099811-5099888)
[»] chr3 (11 HSPs)
chr3 (221-294)||(16436550-16436623)
chr3 (251-299)||(8923626-8923674)
chr3 (243-294)||(10991074-10991125)
chr3 (243-294)||(34328414-34328465)
chr3 (219-269)||(16437210-16437260)
chr3 (190-294)||(23514424-23514528)
chr3 (251-299)||(41326539-41326587)
chr3 (243-294)||(8922910-8922961)
chr3 (243-294)||(41325848-41325899)
chr3 (243-294)||(50107594-50107645)
chr3 (246-294)||(52103634-52103682)
[»] chr1 (6 HSPs)
chr1 (221-294)||(27890594-27890667)
chr1 (221-294)||(49399572-49399645)
chr1 (208-288)||(27891243-27891323)
chr1 (243-290)||(49385774-49385821)
chr1 (243-289)||(49385116-49385162)
chr1 (221-294)||(49400256-49400329)
[»] chr5 (2 HSPs)
chr5 (243-294)||(31600474-31600525)
chr5 (243-294)||(31601142-31601193)
[»] chr6 (2 HSPs)
chr6 (350-418)||(9729813-9729881)
chr6 (243-294)||(3295788-3295839)


Alignment Details
Target: chr2 (Bit Score: 551; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 1 - 654
Target Start/End: Original strand, 41993103 - 41993766
Alignment:
Q  1 gtttgggaattgccaaaagagtagttttcaaaataagttatatggtttcctttaattcattgcatttgcatttgagtgaaaattaaatatgtaggaaacg 100  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41993103 gtttgagaattgccaaaagagtagttttcaaaataagttctatggtttcctttaattcattgcatttgcatttgagtgaaaattaaatatgtaggaaacg 41993202  T
Q  101 ggttctgggcgaatagagatggagcaaatgtgttgacatcacatataggttcagggagagaaggatatgagagatgagaagataggtaacaatcacaagt 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     |||||||||||||||||||||    
T  41993203 ggttctgggcgaatagagatggagcaaatgtgttgacagcacatataggttcagggagagaaggatatgagaga-----agataggtaacaatcacaagt 41993297  T
Q  201 ttgtctctttattttagcccttttaatgtcaactgttggatactattttaccacatgtcacacatccattaaggtaaatggggta--------------- 285  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||| |||||||||||||||                   
T  41993298 ttgtctctttattttagcccttttaatgtcaaccgttggatactattttgtcacatgtcacacatccataaaggtaaatggggtaaatggagttaaggta 41993397  T
Q  286 aatggagcatacccgaactcttcaaaacggacatatctactttttgaaccaattcgcttagtgagtgtttggatttgcttttgaaggctcattttcactt 385  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41993398 aatggagcatacccgaactcttcaaaacgagcatatctactttttgaaccaattcgcttagtgagtgtttggatttgcttttgaaggctcattttcactt 41993497  T
Q  386 ttcaatatactttaaacgcgaaaattgtgaagcaaaaatttctaaaatgcacgtctaaaagccttccatcacagtctcaaacactcacttaacctaagac 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  41993498 ttcaatatactttaaacgcgaaaattgtgaagcaaaaatttctaaaatgcacgtctagaagccttccatcgcagtctcaaacactcacttaacctaagac 41993597  T
Q  486 ttatgcaatccataatgcctcaacaaatcatgacattgaagggcttcttccataaggactcctcctccattacttgccaacttgatgtctataaagttga 585  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41993598 tcatgcaatccataatgcctcaacaaatcatgacattgaagggcttcttccataaggactcctcctccattacttgccaacttgatgtctataaagttga 41993697  T
Q  586 gcactctcactcactctattatacattcccaattcccatgtgtttagagtgagaaaagtaacgctgttt 654  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41993698 gcactctcactcactctattatacattcccaattcccatgtgtttagagtgagaaaagtaacgctgttt 41993766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 41992764 - 41992697
Alignment:
Q  229 tcaactgttggatactattttaccacatgtcacacatccattaaggtaaatggggtaaatggagcatac 297  Q
    ||||| |||||||| |||||| |||||| ||||||||| || ||||||||| |||||||||||||||||    
T  41992764 tcaaccgttggatattattttgccacatatcacacatctataaaggtaaat-gggtaaatggagcatac 41992697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 430
Target Start/End: Complemental strand, 42428243 - 42428156
Alignment:
Q  343 ttagtgagtgtttggatttgcttttgaaggctcattttcacttttcaatatactttaaacgcgaaaattgtgaagcaaaaatttctaa 430  Q
    |||||| |||||||||||  |||||| || ||||||| |||||| ||||  |||||||| | ||||| |||||||| | |||||||||    
T  42428243 ttagtgggtgtttggattaacttttggagcctcatttccactttccaatgcactttaaatgtgaaaaatgtgaagctagaatttctaa 42428156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 294
Target Start/End: Complemental strand, 33361146 - 33361073
Alignment:
Q  221 ttttaatgtcaactgttggatactattttaccacatgtcacacatccattaaggtaaatggggtaaatggagca 294  Q
    ||||||| ||||| |||||||| | ||||| ||  |||||||||||||| |||||||||||  ||||| |||||    
T  33361146 ttttaatttcaaccgttggatattcttttaacatgtgtcacacatccatgaaggtaaatggtataaattgagca 33361073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 169; Significance: 3e-90; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 32492960 - 32493239
Alignment:
Q  1 gtttgggaattgccaaaagagtagttttcaaaataagttatatggtttcctttaattcattgcatttgcatttgagtgaaaattaaatatgtaggaaacg 100  Q
    |||||||||||||||||| | ||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||     
T  32492960 gtttgggaattgccaaaacaatagttttcaaaatcagtt-tatggtttcctttaattcattgtatttgcatttgagtggaaattgaatatgtaggaaaca 32493058  T
Q  101 ggttctgggcgaatagagatggagcaaatgtgttgacatcacatataggttcagggagagaaggatatgagagatgagaagataggtaacaatcacaagt 200  Q
    |||| |||| ||||||| |||||||||||| |||||||  |||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  32493059 ggttatgggagaatagatatggagcaaatgcgttgacagaacatattggttcagagggagaaggatatgagagatgagaagataggtaacaatcacaagt 32493158  T
Q  201 ttgtctctttattttagcccttttaatgtcaactgttggatactattttaccacatgtcacacatccattaaggtaaatgg 281  Q
     |||||| ||||||||||| ||||||| ||||| ||| || |||||||| |||||||||||||||| || |||||||||||    
T  32493159 gtgtctccttattttagcctttttaatttcaaccgtttgaaactattttgccacatgtcacacatctataaaggtaaatgg 32493239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 32492650 - 32492581
Alignment:
Q  229 tcaactgttggatactattttaccacatgtcacacatccattaaggtaaatggggtaaatggagcatacc 298  Q
    ||||| |||||||| |||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  32492650 tcaaccgttggatattattttgccacatgtcacacatccataaaggtcaatggggtaaatggagcatacc 32492581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 22492485 - 22492544
Alignment:
Q  235 gttggatactattttaccacatgtcacacatccattaaggtaaatggggtaaatggagca 294  Q
    |||||||| ||||||| ||| |||||||||||||| | |||||||||| |||||||||||    
T  22492485 gttggatattattttagcacgtgtcacacatccatgatggtaaatgggataaatggagca 22492544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 413
Target Start/End: Original strand, 15011359 - 15011429
Alignment:
Q  343 ttagtgagtgtttggatttgcttttgaaggctcattttcacttttcaatatactttaaacgcgaaaattgt 413  Q
    |||||||||||||||||| ||||||| ||||||||||  |||| |||||  |||||||| | |||||||||    
T  15011359 ttagtgagtgtttggattagcttttggaggctcatttcaacttctcaatgcactttaaatgtgaaaattgt 15011429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 45431171 - 45431085
Alignment:
Q  208 tttattttagcccttttaatgtcaactgttggatactattttaccacatgtcacacatccattaaggtaaatggggtaaatggagca 294  Q
    |||||| | ||| |||| || ||||| |||||||| ||||||| ||| |||||||||||||| | |||||||||| ||||| |||||    
T  45431171 tttattgttgccttttttatttcaaccgttggatattattttaacacgtgtcacacatccatgatggtaaatgggataaattgagca 45431085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 48204965 - 48205015
Alignment:
Q  244 tattttaccacatgtcacacatccattaaggtaaatggggtaaatggagca 294  Q
    |||||| ||||||||||||||||||| | ||||||||| ||||||||||||    
T  48204965 tattttgccacatgtcacacatccatgatggtaaatggtgtaaatggagca 48205015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 221 - 294
Target Start/End: Complemental strand, 52237734 - 52237661
Alignment:
Q  221 ttttaatgtcaactgttggatactattttaccacatgtcacacatccattaaggtaaatggggtaaatggagca 294  Q
    ||||||| |||||||||||||| | ||||| ||  |||||||||||||| |||||||||||||||||| |||||    
T  52237734 ttttaatttcaactgttggatattcttttaacatgtgtcacacatccatgaaggtaaatggggtaaattgagca 52237661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 221 - 294
Target Start/End: Original strand, 52238279 - 52238352
Alignment:
Q  221 ttttaatgtcaactgttggatactattttaccacatgtcacacatccattaaggtaaatggggtaaatggagca 294  Q
    ||||||| |||||  ||||||| | ||||| ||| |||||||||||||| |||||||||||||||||| |||||    
T  52238279 ttttaatttcaaccattggatattcttttaacacgtgtcacacatccatgaaggtaaatggggtaaattgagca 52238352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 221 - 294
Target Start/End: Complemental strand, 55633653 - 55633580
Alignment:
Q  221 ttttaatgtcaactgttggatactattttaccacatgtcacacatccattaaggtaaatggggtaaatggagca 294  Q
    ||||||| ||||| ||| ||||||||||| ||| ||||||||||||||| | |||||||||| ||||| |||||    
T  55633653 ttttaatttcaaccgtttgatactattttgccatatgtcacacatccatgatggtaaatgggataaattgagca 55633580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 221 - 296
Target Start/End: Original strand, 48957425 - 48957500
Alignment:
Q  221 ttttaatgtcaactgttggatactattttaccacatgtcacacatccattaaggtaaatggggtaaatggagcata 296  Q
    ||||||| |||||  ||||||| | ||||| |||||||| ||||||| | |||||||||||| |||||||||||||    
T  48957425 ttttaatttcaaccattggatattcttttaacacatgtcgcacatccgtgaaggtaaatgggttaaatggagcata 48957500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 55634240 - 55634290
Alignment:
Q  219 ccttttaatgtcaactgttggatactattttaccacatgtcacacatccat 269  Q
    ||||||||| ||||| ||||||||||||||| |||||||||| ||||||||    
T  55634240 ccttttaatttcaaccgttggatactattttgccacatgtcagacatccat 55634290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 345 - 413
Target Start/End: Original strand, 23860503 - 23860571
Alignment:
Q  345 agtgagtgtttggatttgcttttgaaggctcattttcacttttcaatatactttaaacgcgaaaattgt 413  Q
    |||| ||||||||||| | ||||  ||| ||||||||||||||||||  | ||||||||||||||||||    
T  23860503 agtgggtgtttggattagtttttagaggttcattttcacttttcaatgcattttaaacgcgaaaattgt 23860571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 288
Target Start/End: Original strand, 53328273 - 53328310
Alignment:
Q  251 ccacatgtcacacatccattaaggtaaatggggtaaat 288  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  53328273 ccacatgtcacacatccattaagataaatgaggtaaat 53328310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 48956705 - 48956669
Alignment:
Q  252 cacatgtcacacatccattaaggtaaatggggtaaat 288  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  48956705 cacatgtcacacatccatgaagataaatggggtaaat 48956669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 38443111 - 38443060
Alignment:
Q  243 ctattttaccacatgtcacacatccattaaggtaaatggggtaaatggagca 294  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||    
T  38443111 ctattttgccacatgtcacacatccatgatggtaaatggggtaaatggagca 38443060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 17626326 - 17626387
Alignment:
Q  229 tcaactgttggatactattttaccacatgtcacacatccattaaggtaaatggggtaaatgg 290  Q
    ||||| |||||||| |||| |||||| |||||||||||||| | ||||||||||||||||||    
T  17626326 tcaaccgttggatattattataccacgtgtcacacatccatgatggtaaatggggtaaatgg 17626387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 221 - 296
Target Start/End: Complemental strand, 3565926 - 3565851
Alignment:
Q  221 ttttaatgtcaactgttggatactattttaccacatgtcacacatccattaaggtaaatggggtaaatggagcata 296  Q
    ||||||| |||||  || |||| |||||||| |||||| ||||||| || ||||||||| ||||||||||||||||    
T  3565926 ttttaatttcaaccattagatattattttacaacatgttacacatcaataaaggtaaatagggtaaatggagcata 3565851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 3566208 - 3566270
Alignment:
Q  46 tttcctttaattcattgcatttgcatttgagtgaaaattaaatatgtaggaaacgggttctgg 108  Q
    |||||||||||||||||||| |||||||| ||| |||||||||||  ||||||  ||||||||    
T  3566208 tttcctttaattcattgcatctgcatttgcgtggaaattaaatattcaggaaataggttctgg 3566270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 290
Target Start/End: Complemental strand, 17625733 - 17625664
Alignment:
Q  221 ttttaatgtcaactgttggatactattttaccacatgtcacacatccattaaggtaaatggggtaaatgg 290  Q
    ||||||| |||||| ||||||| | ||||  ||| |||| ||||||||| ||||||||||||||||||||    
T  17625733 ttttaatttcaactattggatattcttttgacacgtgtcgcacatccatgaaggtaaatggggtaaatgg 17625664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 243 - 281
Target Start/End: Original strand, 10911005 - 10911043
Alignment:
Q  243 ctattttaccacatgtcacacatccattaaggtaaatgg 281  Q
    ||||||||||||||||||||||||||| | |||||||||    
T  10911005 ctattttaccacatgtcacacatccatgatggtaaatgg 10911043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 427
Target Start/End: Original strand, 5099811 - 5099888
Alignment:
Q  350 gtgtttggatttgcttttgaaggctcattttcacttttcaatatactttaaacgcgaaaattgtgaagcaaaaatttc 427  Q
    ||||||||||| ||||||| || |||||||||||||||  ||  |||||||| | ||||||| ||||||  |||||||    
T  5099811 gtgtttggattagcttttggagactcattttcacttttagatgcactttaaaagtgaaaattatgaagctgaaatttc 5099888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 221 - 294
Target Start/End: Complemental strand, 16436623 - 16436550
Alignment:
Q  221 ttttaatgtcaactgttggatactattttaccacatgtcacacatccattaaggtaaatggggtaaatggagca 294  Q
    ||||||| ||||| ||| ||||||||||| ||| ||||||||||||||| | |||||||||| ||||| |||||    
T  16436623 ttttaatttcaaccgtttgatactattttgccatatgtcacacatccatgatggtaaatgggataaattgagca 16436550  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 8923626 - 8923674
Alignment:
Q  251 ccacatgtcacacatccattaaggtaaatggggtaaatggagcataccc 299  Q
    ||||||||||||||||||| | |||||||||||||||||||||| ||||    
T  8923626 ccacatgtcacacatccatgatggtaaatggggtaaatggagcaaaccc 8923674  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 243 - 294
Target Start/End: Original strand, 10991074 - 10991125
Alignment:
Q  243 ctattttaccacatgtcacacatccattaaggtaaatggggtaaatggagca 294  Q
    ||||||| |||||||||||||||| || | ||||||||||||||||||||||    
T  10991074 ctattttgccacatgtcacacatctatgatggtaaatggggtaaatggagca 10991125  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 34328465 - 34328414
Alignment:
Q  243 ctattttaccacatgtcacacatccattaaggtaaatggggtaaatggagca 294  Q
    |||||||||||||||||||||||| |||| |||||| || ||||||||||||    
T  34328465 ctattttaccacatgtcacacatctattatggtaaacggagtaaatggagca 34328414  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 16437210 - 16437260
Alignment:
Q  219 ccttttaatgtcaactgttggatactattttaccacatgtcacacatccat 269  Q
    ||||||||| ||||| ||||||||||||||| |||||||||| ||||||||    
T  16437210 ccttttaatttcaaccgttggatactattttgccacatgtcagacatccat 16437260  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 190 - 294
Target Start/End: Original strand, 23514424 - 23514528
Alignment:
Q  190 caatcacaagtttgtctctttattttagcccttttaatgtcaactgttggatactattttaccacatgtcacacatccattaaggtaaatggggtaaatg 289  Q
    |||||||| || ||| | |||||| | ||| |||| || ||||| ||| |||| | |||| ||||||||||||||||||| |  |||||||||||||||     
T  23514424 caatcacatgtgtgtttgtttattgttgccttttttatttcaaccgttagatatttttttgccacatgtcacacatccatgatagtaaatggggtaaatt 23514523  T
Q  290 gagca 294  Q
    |||||    
T  23514524 gagca 23514528  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 41326539 - 41326587
Alignment:
Q  251 ccacatgtcacacatccattaaggtaaatggggtaaatggagcataccc 299  Q
    ||||||||||||||||||| | ||||||| |||||||||||||| ||||    
T  41326539 ccacatgtcacacatccatgatggtaaattgggtaaatggagcaaaccc 41326587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 8922961 - 8922910
Alignment:
Q  243 ctattttaccacatgtcacacatccattaaggtaaatggggtaaatggagca 294  Q
    ||||||| ||||||||||||||||||| | | |||||||||||||| |||||    
T  8922961 ctattttgccacatgtcacacatccatgatgataaatggggtaaattgagca 8922910  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 41325899 - 41325848
Alignment:
Q  243 ctattttaccacatgtcacacatccattaaggtaaatggggtaaatggagca 294  Q
    ||||||| ||||||||||||||||||| | | |||||||||||||| |||||    
T  41325899 ctattttgccacatgtcacacatccatgatgataaatggggtaaattgagca 41325848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 50107645 - 50107594
Alignment:
Q  243 ctattttaccacatgtcacacatccattaaggtaaatggggtaaatggagca 294  Q
    ||||||| ||||||||||||||||||| | | |||||||||||||| |||||    
T  50107645 ctattttgccacatgtcacacatccatgatgataaatggggtaaattgagca 50107594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 52103682 - 52103634
Alignment:
Q  246 ttttaccacatgtcacacatccattaaggtaaatggggtaaatggagca 294  Q
    |||| |||||| |||||||||||| |  |||||||||||||||||||||    
T  52103682 tttttccacatatcacacatccatgatagtaaatggggtaaatggagca 52103634  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 221 - 294
Target Start/End: Complemental strand, 27890667 - 27890594
Alignment:
Q  221 ttttaatgtcaactgttggatactattttaccacatgtcacacatccattaaggtaaatggggtaaatggagca 294  Q
    ||||||| ||||| ||| ||||||||||| ||||||||||||||||||| | ||||||| || ||||| |||||    
T  27890667 ttttaatttcaaccgtttgatactattttgccacatgtcacacatccatgatggtaaataggataaattgagca 27890594  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 221 - 294
Target Start/End: Complemental strand, 49399645 - 49399572
Alignment:
Q  221 ttttaatgtcaactgttggatactattttaccacatgtcacacatccattaaggtaaatggggtaaatggagca 294  Q
    ||||||| |||||  ||||||| | ||||| ||| |||||||||||||| |||||||||||||||||| |||||    
T  49399645 ttttaatttcaaccattggatattcttttaacacgtgtcacacatccatcaaggtaaatggggtaaattgagca 49399572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 27891243 - 27891323
Alignment:
Q  208 tttattttagcccttttaatgtcaactgttggatactattttaccacatgtcacacatccattaaggtaaatggggtaaat 288  Q
    |||||| | ||||||||||| ||||  ||||||||||||||| |||||||||| ||||||||   |||||||||| |||||    
T  27891243 tttattattgcccttttaatttcaatcgttggatactattttgccacatgtcagacatccatgttggtaaatgggataaat 27891323  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 290
Target Start/End: Original strand, 49385774 - 49385821
Alignment:
Q  243 ctattttaccacatgtcacacatccattaaggtaaatggggtaaatgg 290  Q
    ||||||| |||||||||||| |||||| | ||||||||||||||||||    
T  49385774 ctattttgccacatgtcacatatccatgatggtaaatggggtaaatgg 49385821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 49385162 - 49385116
Alignment:
Q  243 ctattttaccacatgtcacacatccattaaggtaaatggggtaaatg 289  Q
    ||||||| ||||||||||||||||||| |  ||||||||||||||||    
T  49385162 ctatttttccacatgtcacacatccatgattgtaaatggggtaaatg 49385116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 294
Target Start/End: Original strand, 49400256 - 49400329
Alignment:
Q  221 ttttaatgtcaactgttggatactattttaccacatgtcacacatccattaaggtaaatggggtaaatggagca 294  Q
    ||||||| ||||| |||||||| | ||||| ||  |||||||||| ||| |||||||||||| ||||| |||||    
T  49400256 ttttaatttcaaccgttggatattcttttaacatgtgtcacacatgcatgaaggtaaatgggataaattgagca 49400329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 31600525 - 31600474
Alignment:
Q  243 ctattttaccacatgtcacacatccattaaggtaaatggggtaaatggagca 294  Q
    ||||||| ||||||||||||||||||| | | ||||||||||||||||||||    
T  31600525 ctattttgccacatgtcacacatccatgatgataaatggggtaaatggagca 31600474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 243 - 294
Target Start/End: Original strand, 31601142 - 31601193
Alignment:
Q  243 ctattttaccacatgtcacacatccattaaggtaaatggggtaaatggagca 294  Q
    ||||||||||||||||||||||||||| |  | |||||||||||||||||||    
T  31601142 ctattttaccacatgtcacacatccatgatagcaaatggggtaaatggagca 31601193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 418
Target Start/End: Complemental strand, 9729881 - 9729813
Alignment:
Q  350 gtgtttggatttgcttttgaaggctcattttcacttttcaatatactttaaacgcgaaaattgtgaagc 418  Q
    ||||||||||| ||||||| |||||||| | |||||  ||||  |||||||||| ||||||||||||||    
T  9729881 gtgtttggattagcttttggaggctcatctccacttcccaatgcactttaaacgtgaaaattgtgaagc 9729813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 294
Target Start/End: Original strand, 3295788 - 3295839
Alignment:
Q  243 ctattttaccacatgtcacacatccattaaggtaaatggggtaaatggagca 294  Q
    |||||||  ||||||||||| |||||| | ||||||||||||||||||||||    
T  3295788 ctattttggcacatgtcacatatccatgatggtaaatggggtaaatggagca 3295839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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