View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11953_high_21 (Length: 239)
Name: NF11953_high_21
Description: NF11953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11953_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 29817939 - 29818161
Alignment:
| Q |
1 |
aattgaagctgttcgcaccaatttagacaaagaaatctcagtcttgaaagtttagaaatgctgcttggtatgataacaaaattgttaccagttagatcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29817939 |
aattgaagctgttcgcaccaatttagacaaagaaatctcagtcttgaaagtttagaaatgctgcttggtatgataacaaaattgttaccagttagatcca |
29818038 |
T |
|
| Q |
101 |
aagacttcaaagatgataggtggtgaaaataattcgggatcgattcttcagaaagattacaataacttaggtttaaatacttcaaagaatgtaagctcag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29818039 |
aagacttcaaagatgataggtggtgaaaataattcgggatcgattcttcagaaagattacaataacttaggtttaaatatttcaaagaatgtaagctcag |
29818138 |
T |
|
| Q |
201 |
gaaagaagttggtaatctgaatc |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
29818139 |
gaaagaagttggtaatctgaatc |
29818161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 29574207 - 29573985
Alignment:
| Q |
1 |
aattgaagctgttcgcaccaatttagacaaagaaatctcagtcttgaaagtttagaaatgctgcttggtatgataacaaaattgttaccagttagatcca |
100 |
Q |
| |
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|||||||||| || |||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
29574207 |
aattgaagcttttggcaccaatttagacaaagaaatctaagccttgaaagtttagaaatgctacttggtatgataacaaaattgttaccagtcagatcca |
29574108 |
T |
|
| Q |
101 |
aagacttcaaagatgataggtggtgaaaataattcgggatcgattcttcagaaagattacaataacttaggtttaaatacttcaaagaatgtaagctcag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| |||| | || |
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| T |
29574107 |
aagacttcaaagatgataggtggtgaaaataattcgggaatgattcttcagaaagattacaataacttaggtttaaatattccaaagaaggtaatcccat |
29574008 |
T |
|
| Q |
201 |
gaaagaagttggtaatctgaatc |
223 |
Q |
| |
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|| |||| ||||||||||||||| |
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| T |
29574007 |
gacagaacttggtaatctgaatc |
29573985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 49 - 223
Target Start/End: Original strand, 29595878 - 29596052
Alignment:
| Q |
49 |
agtttagaaatgctgcttggtatgataacaaaattgttaccagttagatccaaagacttcaaagatgataggtggtgaaaataattcgggatcgattctt |
148 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||| ||||| ||||||| |
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| T |
29595878 |
agtttagaaatggtgcttggtatgtaaacaaaattgttaccagttagatccaaagacttcaacgatgataagtggcgaagataatctgggattgattctt |
29595977 |
T |
|
| Q |
149 |
cagaaagattacaataacttaggtttaaatacttcaaagaatgtaagctcaggaaagaagttggtaatctgaatc |
223 |
Q |
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||||||||||||| ||||||| ||||| ||| |||||||| |||| || | ||||||||| |||||||||| |
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| T |
29595978 |
cagaaagattacagtaacttaagtttatatatctcaaagaaggtaaattccaaagagaagttggaaatctgaatc |
29596052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 29826197 - 29826365
Alignment:
| Q |
1 |
aattgaagctgttcgcaccaatttagacaaagaaatctcagtcttgaaagtttagaaatgctgcttggtatgataacaaaattgttaccagttagatcca |
100 |
Q |
| |
|
|||||||||| |||||| ||||||||| ||||| | ||| | || |||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29826197 |
aattgaagcttttcgcagcaatttagagtaagaagttccagcttcgagagttcagaaatgctgcttggtatggtaacaaaattgttaccagttagatcca |
29826296 |
T |
|
| Q |
101 |
aagacttcaaagatgataggtggtgaaaataattcgggatcgattcttcagaaagattacaataactta |
169 |
Q |
| |
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||||| ||| || | || ||| ||||||||| ||||| |||||||||||||||| ||||||||||| |
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|
| T |
29826297 |
aagacaccaatgacgttaattggagaaaataatgtgggattgattcttcagaaagatcacaataactta |
29826365 |
T |
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