View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11953_high_7 (Length: 410)

Name: NF11953_high_7
Description: NF11953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11953_high_7
NF11953_high_7
[»] chr1 (8 HSPs)
chr1 (18-395)||(48590872-48591250)
chr1 (18-395)||(48600567-48600945)
chr1 (273-395)||(48595954-48596077)
chr1 (166-263)||(35109729-35109825)
chr1 (177-255)||(10996771-10996849)
chr1 (176-263)||(8281133-8281220)
chr1 (176-248)||(17345733-17345805)
chr1 (176-248)||(50521317-50521389)
[»] chr6 (4 HSPs)
chr6 (176-255)||(1115308-1115387)
chr6 (176-248)||(33721771-33721842)
chr6 (178-260)||(98972-99055)
chr6 (176-245)||(9036093-9036162)
[»] chr2 (4 HSPs)
chr2 (176-263)||(16388259-16388345)
chr2 (176-263)||(16388673-16388759)
chr2 (178-248)||(28770998-28771068)
chr2 (179-247)||(18674621-18674684)
[»] scaffold0076 (1 HSPs)
scaffold0076 (176-248)||(16193-16265)
[»] chr5 (2 HSPs)
chr5 (174-278)||(30899666-30899770)
chr5 (176-245)||(34842415-34842484)
[»] chr8 (4 HSPs)
chr8 (196-276)||(9055022-9055102)
chr8 (196-247)||(5990774-5990825)
chr8 (172-223)||(8863876-8863927)
chr8 (176-247)||(7493283-7493352)
[»] chr4 (6 HSPs)
chr4 (176-254)||(873731-873809)
chr4 (174-220)||(34670937-34670983)
chr4 (222-255)||(8114940-8114973)
chr4 (176-221)||(22660079-22660124)
chr4 (175-248)||(37781672-37781745)
chr4 (289-334)||(39245921-39245966)
[»] chr7 (3 HSPs)
chr7 (204-245)||(8140952-8140993)
chr7 (176-255)||(5817482-5817559)
chr7 (176-260)||(27984294-27984381)


Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 395
Target Start/End: Complemental strand, 48591250 - 48590872
Alignment:
Q  18 gaggagatacaaatgaaaatgaaccgcagaaacatatataccgtcgaccatgctcagtctaaattagcaaaaacaatatgttaaaatgaaaatgatgttc 117  Q
    |||||||||||||||||||||| ||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48591250 gaggagatacaaatgaaaatgagccgtagaaacgtatgtaccgtcgaccatgctcagtctaaattagcaaaaacaatatgttaaaatgaatatgatgttc 48591151  T
Q  118 gaactattctttttagggaagtgagtgatgttagaatattttattatataattatatgtgttgtgaattggaacaaataatcacatcaataaaacctaga 217  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||| ||||    
T  48591150 gaactattctttttaggggagtgagtgatgttagaatattttattatataattatatgtgttgtgaattcaaataaataatcacatcaataaaacttaga 48591051  T
Q  218 tgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtctcaataaacaacgacaacagttctagaattaagtgtagagcaacatcacagccatatt 317  Q
    |||||| |||||||||| ||||||||||||||||||||||||   |   ||||| |||||||| |||||||||| ||| |||||||||||||||||||||    
T  48591050 tgtgtgaagtaaaagaaatagtaatcaatgaacaaagttgtcaacaacgacaacaacaacagtcctagaattaaatgtggagcaacatcacagccatatt 48590951  T
Q  318 caaaacaataacgataa-taaaacaacacactaatattatttatccaattcgatcaaagggagggtcggcaacatgtga 395  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  48590950 caaaacaataacgataaataaaacaacacactaatattatttacccaattcgatcaatgggagggtcggcaacatgtga 48590872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 395
Target Start/End: Complemental strand, 48600945 - 48600567
Alignment:
Q  18 gaggagatacaaatgaaaatgaaccgcagaaacatatataccgtcgaccatgctcagtctaaattagcaaaaacaatatgttaaaatgaaaatgatgttc 117  Q
    |||||||||||||||||||||| ||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48600945 gaggagatacaaatgaaaatgagccgtagaaacgtatgtaccgtcgaccatgctcagtctaaattagcaaaaacaatatgttaaaatgaatatgatgttc 48600846  T
Q  118 gaactattctttttagggaagtgagtgatgttagaatattttattatataattatatgtgttgtgaattggaacaaataatcacatcaataaaacctaga 217  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||| ||||    
T  48600845 gaactattctttttaggggagtgagtgatgttagaatattttattatataattatatgtgttgtgaattcaaataaataatcacatcaataaaacttaga 48600746  T
Q  218 tgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtctcaataaacaacgacaacagttctagaattaagtgtagagcaacatcacagccatatt 317  Q
    |||||| |||||||||| ||||||||||||||||||||||||   |   ||||| |||||||| |||||||||| ||| |||||||||||||||||||||    
T  48600745 tgtgtgaagtaaaagaaatagtaatcaatgaacaaagttgtcaacaacgacaacaacaacagtcctagaattaaatgtggagcaacatcacagccatatt 48600646  T
Q  318 caaaacaataacgataa-taaaacaacacactaatattatttatccaattcgatcaaagggagggtcggcaacatgtga 395  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  48600645 caaaacaataacgataaataaaacaacacactaatattatttacccaattcgatcaatgggagggtcggcaacatgtga 48600567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 273 - 395
Target Start/End: Complemental strand, 48596077 - 48595954
Alignment:
Q  273 acaacagttctagaattaagtgtagagcaacatcacagccatattcaaaacaataacgataa-taaaacaacacactaatattatttatccaattcgatc 371  Q
    ||||||||  ||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||| ||||| |||||||||||    
T  48596077 acaacagtcgtagaattaagtgtggagcaacatcagagccatattcaaaacaataacgataaataaaacaacacaccaatatgatttacccaattcgatc 48595978  T
Q  372 aaagggagggtcggcaacatgtga 395  Q
    |||||||||||||| |||||||||    
T  48595977 aaagggagggtcggtaacatgtga 48595954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 166 - 263
Target Start/End: Complemental strand, 35109825 - 35109729
Alignment:
Q  166 taattatatgtgttgtgaattggaacaaa-taatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtctcaa 263  Q
    ||||||||| ||| ||||||| ||||||| |||||||| ||||||||| ||||||||| ||| ||| ||||||||||||||||  |||||| |||||||    
T  35109825 taattatatctgtagtgaattcgaacaaaataatcacaccaataaaacttagatgtgtagaggaaaggaagtagtaatcaatg--caaagtagtctcaa 35109729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 10996771 - 10996849
Alignment:
Q  177 gttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagt 255  Q
    |||||||||| ||||||| ||||||| ||||||||| || || ||| |||||||  ||||||||||||||||| |||||    
T  10996771 gttgtgaattcgaacaaacaatcacaccaataaaacttacatatgtagagtaaagaaagtagtaatcaatgaataaagt 10996849  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 263
Target Start/End: Original strand, 8281133 - 8281220
Alignment:
Q  176 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtctcaa 263  Q
    |||||||||||  ||| |||||| | | ||||| ||| ||||||||| || |||| ||| |||||||||||||| ||||| |||||||    
T  8281133 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaaatagtaatcaatgaataaagtagtctcaa 8281220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 17345805 - 17345733
Alignment:
Q  176 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatga 248  Q
    ||||||||||| | ||||  || |||| |||| ||||  |||||||||||| ||| |||||||||||||||||    
T  17345805 tgttgtgaattcggacaagaaaccacaccaatgaaacaaagatgtgtggagcaaaggaagtagtaatcaatga 17345733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 50521389 - 50521317
Alignment:
Q  176 tgttgtgaattggaacaaataatcacatcaataaaaccta--gatgtgtggagtaaaagaagtagtaatcaatga 248  Q
    ||||||||||| | |||||  |||||||||||||||  ||  ||||||||||||||| ||||| |||||||||||    
T  50521389 tgttgtgaattcggacaaa--atcacatcaataaaaaataaagatgtgtggagtaaaggaagtggtaatcaatga 50521317  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 1115387 - 1115308
Alignment:
Q  176 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagt 255  Q
    ||||||||||| || ||||||||| || ||||||||| ||||| | ||||||||||||||||||||||||||| ||||||    
T  1115387 tgttgtgaatttgagcaaataatcgcaccaataaaacttagatatatggagtaaaagaagtagtaatcaatgagcaaagt 1115308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 33721842 - 33721771
Alignment:
Q  176 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatga 248  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||  ||| |||||||||||| ||||    
T  33721842 tgttgtgaatttgaacaaataatcacatcaataaaacc-agatgtgtggaacaaaggaagtagtaatcgatga 33721771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 98972 - 99055
Alignment:
Q  178 ttgtgaattggaacaaataa-tcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtct 260  Q
    ||||||||| || ||||||| ||||  ||||||||| || | |||||||||||| ||||||||||||||||| |||||| ||||    
T  98972 ttgtgaattcgagcaaataaatcacgccaataaaacttaaacgtgtggagtaaaggaagtagtaatcaatgagcaaagtagtct 99055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 9036093 - 9036162
Alignment:
Q  176 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaa 245  Q
    ||||||||||| || |||||||| ||| ||||||| | ||||| ||||||| ||| ||||||||||||||    
T  9036093 tgttgtgaatttgatcaaataattacaccaataaatcttagatatgtggagcaaatgaagtagtaatcaa 9036162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 263
Target Start/End: Original strand, 16388259 - 16388345
Alignment:
Q  176 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtctcaa 263  Q
    ||||||||||| ||||||||||||||| | ||||| | ||||||||||||| |||  ||||||||||||||||| ||||| |||||||    
T  16388259 tgttgtgaattcgaacaaataatcacaccgataaa-cttagatgtgtggagcaaagaaagtagtaatcaatgaataaagtagtctcaa 16388345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 263
Target Start/End: Complemental strand, 16388759 - 16388673
Alignment:
Q  176 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtctcaa 263  Q
    |||||||||||  |||||||||||||||||||||| | ||||||||||||| ||||  |||||||||||||||  ||||| |||||||    
T  16388759 tgttgtgaattcaaacaaataatcacatcaataaa-cttagatgtgtggagcaaaaatagtagtaatcaatgagtaaagtagtctcaa 16388673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 28771068 - 28770998
Alignment:
Q  178 ttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatga 248  Q
    ||||||||| ||||||||||||| ||||||||||  |||| |||||| | ||| |||||||||||||||||    
T  28771068 ttgtgaatttgaacaaataatcatatcaataaaatttagacgtgtggtgcaaatgaagtagtaatcaatga 28770998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 18674684 - 18674621
Alignment:
Q  179 tgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatg 247  Q
    ||||||||  ||||||||||||||||||||     |||||||||| ||||||  |||||||||||||||    
T  18674684 tgtgaattcaaacaaataatcacatcaata-----tagatgtgtgaagtaaagaaagtagtaatcaatg 18674621  T

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Target: scaffold0076 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 16265 - 16193
Alignment:
Q  176 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatga 248  Q
    ||||||||||| |||| |||||| ||| ||||||||| ||||||||| ||| ||| |||||||||||||||||    
T  16265 tgttgtgaatttgaactaataattacaccaataaaacttagatgtgtcgagcaaaggaagtagtaatcaatga 16193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 278
Target Start/End: Original strand, 30899666 - 30899770
Alignment:
Q  174 tgtgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtctcaataaacaacga 273  Q
    |||||||||||||  |||||  || || ||||||||||| |||||||||||||  |||||| ||||||||||||| |||||| | |||||  |||||| |    
T  30899666 tgtgttgtgaattcaaacaataaaacatatcaataaaacttagatgtgtggagctaaagaaatagtaatcaatgagcaaagtagcctcaagcaacaacaa 30899765  T
Q  274 caaca 278  Q
    |||||    
T  30899766 caaca 30899770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 34842415 - 34842484
Alignment:
Q  176 tgttgtgaattggaacaa-ataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaa 245  Q
    ||||||||||| |||||| | ||||||| ||||||| | ||||||||||||||||| ||||||||||||||    
T  34842415 tgttgtgaattagaacaataaaatcacaccaataaa-cttagatgtgtggagtaaaggaagtagtaatcaa 34842484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 276
Target Start/End: Complemental strand, 9055102 - 9055022
Alignment:
Q  196 aatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtctcaataaacaacgacaa 276  Q
    |||||||||||| ||||   ||||||||||||||| |||||| ||||||||| | ||||| ||||||| ||||||| ||||    
T  9055102 aatcacatcaatgaaacaatgatgtgtggagtaaaggaagtactaatcaatggataaagtagtctcaaaaaacaacaacaa 9055022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 5990825 - 5990774
Alignment:
Q  196 aatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatg 247  Q
    |||||||||||||||||  ||||||| |||| ||| ||||||||||||||||    
T  5990825 aatcacatcaataaaacaaagatgtgcggagcaaaggaagtagtaatcaatg 5990774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 8863927 - 8863876
Alignment:
Q  172 tatgtgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtg 223  Q
    |||||| |||||||| ||||||||||||||| ||||||||| || |||||||    
T  8863927 tatgtgctgtgaattcgaacaaataatcacaccaataaaacttaaatgtgtg 8863876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 7493352 - 7493283
Alignment:
Q  176 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatg 247  Q
    ||||||||||| | |||||  |||||| |||||||||   ||||||||||| ||| ||||||||||||||||    
T  7493352 tgttgtgaattcggacaaa--atcacaccaataaaactatgatgtgtggagcaaaggaagtagtaatcaatg 7493283  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 254
Target Start/End: Complemental strand, 873809 - 873731
Alignment:
Q  176 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaag 254  Q
    |||||||||||  |||||||||| ||| ||||||||| ||||||| | ||||||  ||||| ||||||||||| |||||    
T  873809 tgttgtgaatttaaacaaataattacaccaataaaacttagatgtatagagtaatggaagttgtaatcaatgagcaaag 873731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 34670983 - 34670937
Alignment:
Q  174 tgtgttgtgaattggaacaaataatcacatcaataaaacctagatgt 220  Q
    ||||||||||||| ||||||||||||||| ||||||||  |||||||    
T  34670983 tgtgttgtgaattcgaacaaataatcacaccaataaaatttagatgt 34670937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 255
Target Start/End: Complemental strand, 8114973 - 8114940
Alignment:
Q  222 tggagtaaaagaagtagtaatcaatgaacaaagt 255  Q
    ||||||||||||||||||||||||||| ||||||    
T  8114973 tggagtaaaagaagtagtaatcaatgaccaaagt 8114940  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 22660124 - 22660079
Alignment:
Q  176 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtg 221  Q
    ||||||||||| ||||||||||||||| |||| |||| ||||||||    
T  22660124 tgttgtgaattcgaacaaataatcacaccaatgaaacttagatgtg 22660079  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 37781672 - 37781745
Alignment:
Q  175 gtgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatga 248  Q
    ||||||||||||  |||||||||| | |  |||||||| |||| |||||||| |||||||||||| || |||||    
T  37781672 gtgttgtgaattcaaacaaataattataataataaaacttagaagtgtggagcaaaagaagtagtcattaatga 37781745  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 334
Target Start/End: Original strand, 39245921 - 39245966
Alignment:
Q  289 taagtgtagagcaacatcacagccatattcaaaacaataacgataa 334  Q
    |||||||||||||||| ||||| |||| |||||||||||| |||||    
T  39245921 taagtgtagagcaacaccacaggcataatcaaaacaataaagataa 39245966  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 8140993 - 8140952
Alignment:
Q  204 caataaaacctagatgtgtggagtaaaagaagtagtaatcaa 245  Q
    |||||||||  |||||||||||| ||||||||||||||||||    
T  8140993 caataaaactaagatgtgtggagcaaaagaagtagtaatcaa 8140952  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 5817559 - 5817482
Alignment:
Q  176 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagt 255  Q
    ||||||||||| | |||||  ||||||||||||||||  ||||||||| || |||  ||||| ||||||||| |||||||    
T  5817559 tgttgtgaattcgtacaaa--atcacatcaataaaacaaagatgtgtgaagcaaagtaagtattaatcaatggacaaagt 5817482  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 260
Target Start/End: Original strand, 27984294 - 27984381
Alignment:
Q  176 tgttgtgaattggaacaaataa-tcacatcaataaaacctagatgtgtggagtaaaagaagtag--taatcaatgaacaaagttgtct 260  Q
    |||||||||||  ||||||||| ||||||||||||||| || |||| ||||| ||| ||| |||  ||||||||||| ||||| ||||    
T  27984294 tgttgtgaattcaaacaaataaatcacatcaataaaacttatatgtttggagcaaaggaattagtataatcaatgaataaagtagtct 27984381  T

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