View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11953_high_8 (Length: 404)
Name: NF11953_high_8
Description: NF11953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11953_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 392
Target Start/End: Original strand, 8788798 - 8789169
Alignment:
| Q |
20 |
cccccactgtacaatatacagtgttaatccctctctttaacagctttatgaggtggcctcccttctctttcggccttactcaatggtagggtgggcttat |
119 |
Q |
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| T |
8788798 |
cccccactgtacaatatacagtgttaatccctctctttaacagctttatgaggtggcctcccttctctttcggccttactcaatggtagggtgggcttat |
8788897 |
T |
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| Q |
120 |
aagtgcacactagctaagttatcctgatattaatgtaaaacttgttaaatttacatgtgcatgaaaattaaaccttttaaaataatgagaaaaagttgat |
219 |
Q |
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| T |
8788898 |
aagtgcacactagctaagttatgctgatattaatgtaaaacttgttaaatttacatgtgcatgaaaattaaacc-tttaaaataatgagaaaaagttgat |
8788996 |
T |
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| Q |
220 |
taaatgaaaatgatatcagccataataatgacaatatagaacatgttcttgatcttaattgannnnnnngttctattcttaatgtttgggtgggggtggt |
319 |
Q |
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| T |
8788997 |
taaatgaaaatgatatcagccataataatgacaatatagaacatgttcttgatcttaattgatttttttgttctattcttaatgtttgggtgggggtggt |
8789096 |
T |
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| Q |
320 |
atgcatttttgtgataaaccaatgagctatatattcccacttaattggtctactactagccaggcctttgctt |
392 |
Q |
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| T |
8789097 |
atgtatttttgtgataaaccaatgagctatatattcccacttaattggtctactactagccaggcctttgctt |
8789169 |
T |
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