View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11953_low_10 (Length: 394)
Name: NF11953_low_10
Description: NF11953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11953_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 29651177 - 29650799
Alignment:
| Q |
1 |
acaccctacaattcaagccttgataccaataaaccagccatgctagtgcaactcaagtgatggtcaagaactcaaacaacattaaccaaagaatagtgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29651177 |
acaccctacaattcaagccttgataccaataaaccagccatgctagtgcaactcaagtgatggtcaagaactcaaacaacattaaccaaagaatagtgaa |
29651078 |
T |
|
| Q |
101 |
tcaagcccagctagcaaatcagattctcttgcactttcatgaagttcgtcttacatttgttggaccaaattatttgcgtctcggatgcacgtgcccgtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29651077 |
tcaagcccagctagcaaatcagattctcttgcactttcatgaagtttgtcttacatttgttggaccaaattatttgcgtctcggatgcacgtgcccgtat |
29650978 |
T |
|
| Q |
201 |
ttcatgcttggtgtgatgagcttggtgcatgcacaatgaatccactacttctatcttgtgaataagtggagaatcgggggttcgaaccctaatccttgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29650977 |
ttcatgcttggtgtgatgagcttggtgcatgcacaatgaatccactacttctatcttgtgaataagtggagaatcgggggttcgaaccctaatccttgaa |
29650878 |
T |
|
| Q |
301 |
tattgcaatgcattgttctcaccaactaagttatgctcatgaaactattaatccactgtttttacgttgtttgttcttg |
379 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29650877 |
tattgcaatgcattgttcttaccaactaaattatgctcatgaaactattaatccactgtttttacgttgtttgttcttg |
29650799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University