View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11953_low_11 (Length: 342)
Name: NF11953_low_11
Description: NF11953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11953_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 94 - 323
Target Start/End: Complemental strand, 30831368 - 30831140
Alignment:
| Q |
94 |
taacaaagacacatcttgataaaacaaaatattaacaaaggggaagatggaaaaattcaagaatccatcaggaacttctcttttggtaccatcagttcaa |
193 |
Q |
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| T |
30831368 |
taacaaagacacatcttgataaaataaaatattaacaaaggg-aagatggaaaaattcaagaatccatcaggaacttctcttttggtaccatcagttcaa |
30831270 |
T |
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| Q |
194 |
gagttagctaaagatggaaagatttcaaccgttccaccaagatacattcagcctaatcatcaagacttgattctatctgaagttgatactaaccttgaaa |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30831269 |
gagttagctaaagatggaaagatttcaaccgttccaccaagatacattcagcctaatcatcaagacttgattctatctgaagttgatactaaccttcaaa |
30831170 |
T |
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| Q |
294 |
ttccagttattgatatgtataagttgcatt |
323 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
30831169 |
ttccagttattgatatgtataagttgcatt |
30831140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 150 - 323
Target Start/End: Complemental strand, 30836739 - 30836566
Alignment:
| Q |
150 |
tcaagaatccatcaggaacttctcttttggtaccatcagttcaagagttagctaaagatggaaagatttcaaccgttccaccaagatacattcagcctaa |
249 |
Q |
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| T |
30836739 |
tcaagaacccatcaggtacttctcttttggtaccatcagttcaagagttatctaaagatggaaatatttcaaccgttccaccaagatacattcagcctaa |
30836640 |
T |
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| Q |
250 |
tcatcaagacttgattctatctgaagttgatactaaccttgaaattccagttattgatatgtataagttgcatt |
323 |
Q |
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| T |
30836639 |
tcatcaagacttgattctctctgaagttgatactaaccttcaaattccagttattgatatgtataagttgcatt |
30836566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 30831495 - 30831416
Alignment:
| Q |
1 |
tcaaccaagatacaaacaaaatagatttctctctttcaaatcaataatgcatgtggtggtcattcgataaagaggattggtt |
82 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30831495 |
tcaaccaagatacaaacaaaatagatttctct--ttcaaatcaataatgcatgtggtggtcattcgataaagaggataggtt |
30831416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 244
Target Start/End: Complemental strand, 30854486 - 30854395
Alignment:
| Q |
150 |
tcaagaatccatcaggaacttctcttttggtaccatcagttcaagagttagctaaagatggaaagatttcaaccgttccaccaagatacattcag |
244 |
Q |
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| T |
30854486 |
tcaagaacccctctggaacttctcttctggtaccatcagttcaagagttggctaagga---aaaaatttcaacagttccaccaagatatattcag |
30854395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 310
Target Start/End: Complemental strand, 30841973 - 30841816
Alignment:
| Q |
150 |
tcaagaatccatcaggaacttctcttttggtaccatcagttcaagagttagctaaagatggaaagatttcaaccgttccaccaagatacattcagcctaa |
249 |
Q |
| |
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||||||| || || |||||||||||| ||||||||||||| ||||| || ||||| || |||||||||||| |||||| ||||||| |||||| || | |
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| T |
30841973 |
tcaagaacccctctggaacttctcttctggtaccatcagtccaagaattggctaagga---aaagatttcaacagttccagcaagatatattcagtctca |
30841877 |
T |
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| Q |
250 |
tcatcaagacttgattctatctgaagttgatactaaccttgaaattccagttattgatatg |
310 |
Q |
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||| |||| ||| | | ||||| | ||| || |||||||||||||||||||||||| |
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| T |
30841876 |
acatgaagaattggtcatcaatgaagctaatagtatacttgaaattccagttattgatatg |
30841816 |
T |
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