View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11953_low_13 (Length: 284)
Name: NF11953_low_13
Description: NF11953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11953_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 38 - 274
Target Start/End: Complemental strand, 28291454 - 28291222
Alignment:
| Q |
38 |
ttgtagatcatgcaataggagtgtcccttatctttcatgcatgatatgtcaatttcgtgtttaataagcttatcaatatctccatccttgggtgttgggt |
137 |
Q |
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| T |
28291454 |
ttgtagatcatgcaataggagtgtcccttatctttcatgcatgatatgtcaatttcgtgtttaataagcttatcaatatctccatccttaggtgttgggt |
28291355 |
T |
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| Q |
138 |
gcatttaaccaaacaaggattaggtgtgtgtaacaataagatattggaaaaaccaaagtgacacaagaaagaaatttattttgcccctcttgtcatggat |
237 |
Q |
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| T |
28291354 |
gcatttaaccaaacaaggattaggtgtgtgtaacaataagatattggcaaaaccaaagtgacacaagaaagaaatttattttgcccctcttgtc----at |
28291259 |
T |
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| Q |
238 |
aggcaggaaaactattttcatcaagtccctacctttg |
274 |
Q |
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| T |
28291258 |
aggcaggaaaactattttcatcaagtccctacctttg |
28291222 |
T |
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