View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11953_low_18 (Length: 258)
Name: NF11953_low_18
Description: NF11953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11953_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 33399555 - 33399756
Alignment:
| Q |
1 |
tgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgagggggaggctgaaggtgaggagggtgctggataccaaccatcttgttttggc |
100 |
Q |
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| T |
33399555 |
tgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgagggggaggctgaaggtgaggagggtgctggataccaaccatcttgttttggt |
33399654 |
T |
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| Q |
101 |
aaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccaaaggttgtcaatgcaattttatgatgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
33399655 |
aaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccataggttgtcaatgcaattttatcatgtc |
33399754 |
T |
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| Q |
201 |
ca |
202 |
Q |
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|| |
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| T |
33399755 |
ca |
33399756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 202
Target Start/End: Original strand, 33395672 - 33395869
Alignment:
| Q |
2 |
gcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgagggggaggctgaaggtgaggagggtgctggataccaaccatcttgttttggca |
101 |
Q |
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| T |
33395672 |
gcatttgaaggtggtgctgcttcaggagtcggcacaggtgagggtgacggggaggctgaaggt---gagggtactggagaccaaccaaactgtggtggct |
33395768 |
T |
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| Q |
102 |
aaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccaaaggttgtcaatgcaattttatgatgtcc |
201 |
Q |
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| T |
33395769 |
gcacgtttatgaaaagcttttggccaagattgcagtgatgagcagcacctgaaatgtaccatcttcttccataggttgtcaataaaattgtatcatgtcc |
33395868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 180
Target Start/End: Original strand, 33441945 - 33442050
Alignment:
| Q |
75 |
ctggataccaaccatcttgttttggcaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccaaa |
174 |
Q |
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||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| | |
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| T |
33441945 |
ctggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccata |
33442044 |
T |
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| Q |
175 |
ggttgt |
180 |
Q |
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|||||| |
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| T |
33442045 |
ggttgt |
33442050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 180
Target Start/End: Original strand, 33452165 - 33452270
Alignment:
| Q |
75 |
ctggataccaaccatcttgttttggcaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccaaa |
174 |
Q |
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||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| | |
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| T |
33452165 |
ctggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccata |
33452264 |
T |
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| Q |
175 |
ggttgt |
180 |
Q |
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|||||| |
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| T |
33452265 |
ggttgt |
33452270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 33395572 - 33395622
Alignment:
| Q |
1 |
tgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgaggg |
51 |
Q |
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||||||||||| ||||||||||||| ||||||| ||||||||||||||| |
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| T |
33395572 |
tgcatttgaagacggtgctgcttcatgggccggtgtaggtgagggtgaggg |
33395622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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