View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11953_low_21 (Length: 247)

Name: NF11953_low_21
Description: NF11953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11953_low_21
NF11953_low_21
[»] chr4 (24 HSPs)
chr4 (18-247)||(35969276-35969505)
chr4 (18-247)||(36635835-36636067)
chr4 (19-246)||(36627112-36627342)
chr4 (18-247)||(28125768-28126001)
chr4 (18-247)||(18360973-18361207)
chr4 (18-247)||(36601722-36601956)
chr4 (49-246)||(55965765-55965965)
chr4 (164-244)||(29677446-29677526)
chr4 (160-246)||(36612402-36612488)
chr4 (153-229)||(43941954-43942030)
chr4 (164-246)||(36664919-36665001)
chr4 (169-246)||(36616590-36616667)
chr4 (164-246)||(18084012-18084094)
chr4 (168-246)||(36630273-36630351)
chr4 (18-120)||(36630399-36630501)
chr4 (181-246)||(18365178-18365243)
chr4 (181-246)||(36597682-36597747)
chr4 (19-124)||(36642496-36642601)
chr4 (181-246)||(36910512-36910577)
chr4 (181-246)||(36642658-36642723)
chr4 (152-244)||(36655955-36656047)
chr4 (43-123)||(36664792-36664872)
chr4 (168-246)||(52187794-52187872)
chr4 (18-88)||(18365336-18365406)
[»] chr6 (3 HSPs)
chr6 (161-246)||(33839341-33839426)
chr6 (19-246)||(33843103-33843333)
chr6 (19-122)||(33839187-33839290)
[»] chr5 (2 HSPs)
chr5 (160-246)||(19657373-19657459)
chr5 (160-246)||(19674217-19674303)
[»] chr1 (3 HSPs)
chr1 (18-122)||(42601786-42601890)
chr1 (182-246)||(42601950-42602014)
chr1 (181-246)||(28927459-28927524)
[»] chr8 (1 HSPs)
chr8 (18-246)||(35336719-35336947)
[»] chr7 (2 HSPs)
chr7 (182-246)||(30597242-30597306)
chr7 (181-241)||(6849712-6849772)
[»] chr3 (3 HSPs)
chr3 (181-246)||(7119802-7119867)
chr3 (181-246)||(13460643-13460708)
chr3 (181-241)||(7127018-7127078)
[»] chr2 (3 HSPs)
chr2 (182-240)||(43429258-43429316)
chr2 (181-246)||(43863138-43863203)
chr2 (180-236)||(43866610-43866666)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 35969505 - 35969276
Alignment:
Q  18 aactattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35969505 aactattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttactcgacttggcagcaactttctttaac 35969406  T
Q  118 atggcattcactacgcggggtaatcccagttgagtttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctcta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35969405 atggcattcactacgcggggtaatcccagttgagtttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctcta 35969306  T
Q  218 ataaatcaggaactaaggagagaatctaaa 247  Q
    ||| ||||||||||||||||||||||||||    
T  35969305 atatatcaggaactaaggagagaatctaaa 35969276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 36635835 - 36636067
Alignment:
Q  18 aactattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaac 117  Q
    |||||||||||| ||||||||||| |||||||||| ||||||||| || |||  |||||||| ||||||||||| ||||||||||||| |||||||||||    
T  36635835 aactattccatcaggtatgggaggtggttccaaacgtgctttaaaagcctttcttaacttggcagcttctttacgtgacttggcagcagctttctttaac 36635934  T
Q  118 atgg---cattcactacgcggggtaatcccagttgagtttgaagagg-ttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacc 213  Q
    ||||   | ||||| | |  ||||||| ||| |||| ||   | ||| ||||| |||||||||||| ||||||||||||||||||||| | |||| ||||    
T  36635935 atggcttctttcaccaggttgggtaatgccatttga-ttactacaggtttccagttttatttccatagacttcaagttacacaaagaaggcagcttaacc 36636033  T
Q  214 tctaataaatcaggaactaaggagagaatctaaa 247  Q
    |||| ||||||||||||||| |||||||||||||    
T  36636034 tctagtaaatcaggaactaatgagagaatctaaa 36636067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 36627112 - 36627342
Alignment:
Q  19 actattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaaca 118  Q
    ||||||||||| ||||||| ||| |||| | |||||||||||||||||||| ||| ||| | ||||||||||| |||  |||||  | || |||||||||    
T  36627112 actattccatcaggtatggaaggtggtttccaacctgctttaaatgcttttcgtacctttgcagcttctttacgtgatgtggcaatagctctctttaaca 36627211  T
Q  119 tggcat---tcactacgcggggtaatcccagttgagtttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctc 215  Q
    ||||||   ||| || |  ||||||||| || |||  ||  |  |||||||||||||||||||| |||||||||||||  |||||| |||||||||||||    
T  36627212 tggcatctttcaatatgaagggtaatcctagctgaacttcgattggttccaattttatttccattgacttcaagttaccgaaagaagggagctcaacctc 36627311  T
Q  216 taataaatcaggaactaaggagagaatctaa 246  Q
     ||||||||||||||||||||||||||||||    
T  36627312 caataaatcaggaactaaggagagaatctaa 36627342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 28126001 - 28125768
Alignment:
Q  18 aactattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgactt-ggcagcaactttctttaa 116  Q
    ||||||||| || ||||||||||| |||||  ||||||||| |||| || ||||||||  |  |||||||| || |||||| ||||||| ||||||||||    
T  28126001 aactattccgtccggtatgggaggtggttcagaacctgcttcaaattctgtttgtaacccgtcagcttcttcacgtgactttggcagcagctttctttaa 28125902  T
Q  117 catggcatt---cactacgcggggtaatcccagttgagtttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacc 213  Q
    ||||  |||   | |||    |||||||  |  ||| | |||| | ||| ||||||||||||||||||||||||||| |||||||||| |||||| ||||    
T  28125901 catgcgatttttcgctatttagggtaataacccttgtgcttgaggtggtgccaattttatttccatcgacttcaagtaacacaaagaacggagcttaacc 28125802  T
Q  214 tctaataaatcaggaactaaggagagaatctaaa 247  Q
    |||| |||||||||||||||||||||||||||||    
T  28125801 tctagtaaatcaggaactaaggagagaatctaaa 28125768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 18361207 - 18360973
Alignment:
Q  18 aactattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaac 117  Q
    |||||||||||| ||||||||||  |||| ||||| ||||| |||||| |||  |||||| | ||||||||||| |||||||||||||||||||||||||    
T  18361207 aactattccatcaggtatgggagatggtttcaaacttgcttcaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaactttctttaac 18361108  T
Q  118 atggcat---tcactacgcggggtaatcccagttgagtttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagct---caa 211  Q
    |||||||   |||||| |  ||||||||||| |||  |   | |  |||||| |||||||||  | |||||||||||||||||||||   ||||    ||    
T  18361107 atggcatcgctcactatgttgggtaatccca-ttggatgctaggtagttccagttttatttctgtagacttcaagttacacaaagaagatagcttaataa 18361009  T
Q  212 cctctaataaatcaggaactaaggagagaatctaaa 247  Q
    |||||| ||||| ||||||||||||||| |||||||    
T  18361008 cctctagtaaataaggaactaaggagagtatctaaa 18360973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 36601722 - 36601956
Alignment:
Q  18 aactattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaac 117  Q
    |||||||||||| ||||||||||  |||| ||||| ||||| |||||| |||  |||||| | ||||||||||| |||||||||||||||||||||||||    
T  36601722 aactattccatcaggtatgggagatggtttcaaacttgcttcaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaactttctttaac 36601821  T
Q  118 atggcat---tcactacgcggggtaatcccagttgagtttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagct---caa 211  Q
    |||||||   |||||| |  ||||||||||| |||  |   | |  |||||| |||||||||  | |||||||||||||||||||||   ||||    ||    
T  36601822 atggcatcgctcactatgttgggtaatccca-ttggatgctaggtagttccagttttatttctgtagacttcaagttacacaaagaagatagcttaataa 36601920  T
Q  212 cctctaataaatcaggaactaaggagagaatctaaa 247  Q
    |||||| ||||| ||||||||||||||| |||||||    
T  36601921 cctctagtaaataaggaactaaggagagtatctaaa 36601956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 246
Target Start/End: Original strand, 55965765 - 55965965
Alignment:
Q  49 aaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaacatggcat---tcactacgcggggtaatccca 145  Q
    ||||| |||| |||||||||||||||||||||||||||||  |  |||| ||||||| |||||||||||||||| |   ||| || | |||||||| |||    
T  55965765 aaacccgcttcaaatgctttttgtaacttggtagcttcttcgcaagactcggcagcatctttctttaacatggcttctttcattaagtggggtaattcca 55965864  T
Q  146 gttgagtttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatcta 245  Q
      | |  || | | |||||||||| ||||||| ||||||||||||||||||||||| |||| |  | ||| |||||||  ||||||||||||||||||||    
T  55965865 tatcatctttaggtggttccaattctatttccgtcgacttcaagttacacaaagaagggagtttgagctccaataaattgggaactaaggagagaatcta 55965964  T
Q  246 a 246  Q
    |    
T  55965965 a 55965965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 29677526 - 29677446
Alignment:
Q  164 ccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatct 244  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||| |||||||  ||||||||||||||||||||||||||    
T  29677526 ccaatttaatttccatcgacttcaagttacacaaagagtggagcttaacctctggtaaatcaggaactaaggagagaatct 29677446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 36612402 - 36612488
Alignment:
Q  160 ggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 246  Q
    ||||||||||||||||| || ||||| ||||| ||||||||| |||||| |||||||||||||||||||| ||||||||||||||||    
T  36612402 ggttccaattttatttctatagactttaagttgcacaaagaagggagcttaacctctaataaatcaggaattaaggagagaatctaa 36612488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 43942030 - 43941954
Alignment:
Q  153 ttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaa 229  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||||||| |||||| ||| ||||||||| ||||||    
T  43942030 ttgaagtggttccaattttatttccatagactttaagttacacaaagaagggagcttaacttctaataaaccaggaa 43941954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 36664919 - 36665001
Alignment:
Q  164 ccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 246  Q
    |||||| || |||||  |||||||||||||| || ||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  36664919 ccaattctacttccaatgacttcaagttacataacgaagggagcttaacctccaataaatcaggaactaaggagagaatctaa 36665001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 36616590 - 36616667
Alignment:
Q  169 tttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 246  Q
    |||||||||| | ||||||||||||| |||||| |||||| |||||| |||| ||||||||||||||| |||||||||    
T  36616590 tttatttccaccaacttcaagttacataaagaagggagcttaacctccaatagatcaggaactaaggacagaatctaa 36616667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 246
Target Start/End: Complemental strand, 18084094 - 18084012
Alignment:
Q  164 ccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 246  Q
    |||||| || |||||  |||||||||||||| || ||| |||||| |||||| |||||||||||||||||||| |||||||||    
T  18084094 ccaattctacttccaatgacttcaagttacataacgaagggagcttaacctccaataaatcaggaactaaggacagaatctaa 18084012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 246
Target Start/End: Complemental strand, 36630351 - 36630273
Alignment:
Q  168 ttttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 246  Q
    ||||| |||||  ||| |||||||||| |||||| |||||| |||||| |||||||||||||| |||||||||||||||    
T  36630351 ttttacttccaatgacctcaagttacaaaaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaa 36630273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 36630501 - 36630399
Alignment:
Q  18 aactattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaac 117  Q
    |||||||||||| ||||||| |||   ||| |||||||||||||| || |||  ||||||    ||||||||||||||||| ||||||||||||||||||    
T  36630501 aactattccatcaggtatggcaggtaattctaaacctgctttaaacgcctttcttaacttatcggcttctttacttgacttagcagcaactttctttaac 36630402  T
Q  118 atg 120  Q
    |||    
T  36630401 atg 36630399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 18365243 - 18365178
Alignment:
Q  181 gacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 246  Q
    |||||||||||||||||||||  || || |||||| |||||||||||||| |||||||||||||||    
T  18365243 gacttcaagttacacaaagaagtgaacttaacctccaataaatcaggaacaaaggagagaatctaa 18365178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 36597682 - 36597747
Alignment:
Q  181 gacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 246  Q
    |||||||||||||||||||||  || || |||||| |||||||||||||| |||||||||||||||    
T  36597682 gacttcaagttacacaaagaagtgaacttaacctccaataaatcaggaacaaaggagagaatctaa 36597747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 36642496 - 36642601
Alignment:
Q  19 actattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaaca 118  Q
    ||||||||||  ||||||| ||| ||||||||||  ||||||||||  |||  |||||| | | |||||||||||||| |||||||| ||||||||||||    
T  36642496 actattccattaggtatggcaggtggttccaaacgagctttaaatgtctttcttaacttagcaacttctttacttgacatggcagcatctttctttaaca 36642595  T
Q  119 tggcat 124  Q
     |||||    
T  36642596 aggcat 36642601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 36910577 - 36910512
Alignment:
Q  181 gacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 246  Q
    |||||||||||||| ||||||||||  | |||||| |||||||||||||||||||| |||||||||    
T  36910577 gacttcaagttacataaagaatggaatttaacctccaataaatcaggaactaaggacagaatctaa 36910512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 36642658 - 36642723
Alignment:
Q  181 gacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 246  Q
    |||||||||||||| |||||||| |||| |||||   ||||||||||||||| |||||||||||||    
T  36642658 gacttcaagttacataaagaatgtagcttaaccttcgataaatcaggaactatggagagaatctaa 36642723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 244
Target Start/End: Original strand, 36655955 - 36656047
Alignment:
Q  152 tttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatct 244  Q
    ||||||| | ||||| || ||||||||  ||||||||||||||||||||| | | || || ||  ||||||| ||||||||||||||||||||    
T  36655955 tttgaagtgattccagttctatttccagtgacttcaagttacacaaagaaggtatcttaaacttcaataaattaggaactaaggagagaatct 36656047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 36664792 - 36664872
Alignment:
Q  43 ggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaacatggca 123  Q
    |||||||||| |||||| ||||| |||  |||||| | | |||||||||  |||||||||||| |||||||||||||||||    
T  36664792 ggttccaaacgtgctttgaatgcctttcttaacttagcaacttctttacgagacttggcagcagctttctttaacatggca 36664872  T

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Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 246
Target Start/End: Complemental strand, 52187872 - 52187794
Alignment:
Q  168 ttttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 246  Q
    |||||||| ||  ||||||||| ||||||| ||||||| ||||||||  ||||||||||||||||| || |||| ||||    
T  52187872 ttttattttcagtgacttcaaggtacacaaggaatggaactcaaccttcaataaatcaggaactaaagaaagaacctaa 52187794  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 18365406 - 18365336
Alignment:
Q  18 aactattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctt 88  Q
    |||||||||||| ||||||||||| |||| |||||| || |||||||| || | |||||| | ||||||||    
T  18365406 aactattccatcaggtatgggaggtggttgcaaaccagcattaaatgccttgtttaacttagcagcttctt 18365336  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 33839341 - 33839426
Alignment:
Q  161 gttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 246  Q
    |||||||||||||||||| |||||||||||||||||||||| | |||| |||||| ||||||||||||||||||||||||||||||    
T  33839341 gttccaattttatttccaccgacttcaagttacacaaagaaggaagcttaacctccaataaatcaggaactaaggagagaatctaa 33839426  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 33843103 - 33843333
Alignment:
Q  19 actattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaaca 118  Q
    ||||||||||| |||| || ||| |||  |||||| ||||||||||||||| ||| ||||| ||||||||| | ||||||||||||| ||||||||||||    
T  33843103 actattccatcaggtacggaaggtggtcgcaaacccgctttaaatgcttttcgtagcttggaagcttctttgcgtgacttggcagcagctttctttaaca 33843202  T
Q  119 tggcat---tcactacgcggggtaatcccagttgagtttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctc 215  Q
    |||| |   |||||| |     ||||      |||  || ||| || ||||||||||||||||||||||||||||||| ||||||| | |||| ||||||    
T  33843203 tggcttctttcactaagtacaataattttgtgtgatcttcaagtggctccaattttatttccatcgacttcaagttactcaaagaaggaagcttaacctc 33843302  T
Q  216 taataaatcaggaactaaggagagaatctaa 246  Q
     |||||||  |||||||||||||||||||||    
T  33843303 caataaattgggaactaaggagagaatctaa 33843333  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 33839187 - 33839290
Alignment:
Q  19 actattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaaca 118  Q
    ||||||||||| ||||||| ||| ||||| ||||| ||||||||||||||| ||||||||| ||||||||| | |||||| |||||| ||||||||||||    
T  33839187 actattccatcaggtatggaaggtggttctaaacccgctttaaatgcttttcgtaacttggaagcttctttgcgtgactttgcagcagctttctttaaca 33839286  T
Q  119 tggc 122  Q
    ||||    
T  33839287 tggc 33839290  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 19657373 - 19657459
Alignment:
Q  160 ggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 246  Q
    ||||||| |||||||||||| ||||| ||||| ||||||||| |||||| || ||||||||| ||||||||||||||||||||||||    
T  19657373 ggttccagttttatttccatagactttaagttgcacaaagaagggagcttaagctctaataattcaggaactaaggagagaatctaa 19657459  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 19674217 - 19674303
Alignment:
Q  160 ggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 246  Q
    ||||||| |||||||||||| ||||| ||||| ||||||||| |||||| || ||||||||| ||||||||||||||||||||||||    
T  19674217 ggttccagttttatttccatagactttaagttgcacaaagaagggagcttaagctctaataattcaggaactaaggagagaatctaa 19674303  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 42601786 - 42601890
Alignment:
Q  18 aactattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaac 117  Q
    |||||||||||| ||||||||||| ||||  ||||| ||||||||| | |||  |||||| | ||||||||||| ||||||||||||| |||||||||||    
T  42601786 aactattccatcgggtatgggaggtggttttaaacccgctttaaattcctttcttaacttagcagcttctttacgtgacttggcagcagctttctttaac 42601885  T
Q  118 atggc 122  Q
    |||||    
T  42601886 atggc 42601890  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 42601950 - 42602014
Alignment:
Q  182 acttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 246  Q
    |||||||||||||||| |||  ||||| |||||| ||||||||||||||||||||||||||||||    
T  42601950 acttcaagttacacaacgaagtgagcttaacctccaataaatcaggaactaaggagagaatctaa 42602014  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 28927459 - 28927524
Alignment:
Q  181 gacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 246  Q
    |||||||| |||||||| ||||||| ||||||||  ||||||||||||| ||||| ||||| ||||    
T  28927459 gacttcaatttacacaaggaatggaactcaaccttgaataaatcaggaattaaggtgagaacctaa 28927524  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 35336947 - 35336719
Alignment:
Q  18 aactattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaac 117  Q
    |||||||||||| ||||||||||| |||  |||||||||||||||||  |||  |||||| | |||||| ||||  |||||||||||  |||||||||||    
T  35336947 aactattccatcaggtatgggaggtggtctcaaacctgctttaaatgtctttcttaactttgcagcttcattacaggacttggcagccgctttctttaac 35336848  T
Q  118 atggcatt---cactacgcggggtaatcccagttgagtttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacct 214  Q
    ||||||||   || ||  ||| |||||    || ||   | ||  ||   || || ||||||||  ||||||||||||||||||||| |||||| |||||    
T  35336847 atggcattttccattatacggagtaat---ggtcgataatcaaatggcatcatttctatttccaatgacttcaagttacacaaagaagggagcttaacct 35336751  T
Q  215 ctaataaatcaggaactaaggagagaatctaa 246  Q
    | ||||||||||||||||||||||||| ||||    
T  35336750 ccaataaatcaggaactaaggagagaacctaa 35336719  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 30597242 - 30597306
Alignment:
Q  182 acttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 246  Q
    |||||||||||||||| ||||||| ||||||||  ||||||||||||||||| ||||||| ||||    
T  30597242 acttcaagttacacaaggaatggaactcaaccttcaataaatcaggaactaacgagagaacctaa 30597306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 6849772 - 6849712
Alignment:
Q  181 gacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaa 241  Q
    ||||||||||  ||||| |||||||  |||||||  |||||||||||||||||||||||||    
T  6849772 gacttcaagtcccacaaggaatggaattcaaccttcaataaatcaggaactaaggagagaa 6849712  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 7119867 - 7119802
Alignment:
Q  181 gacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 246  Q
    ||||||||||||||||| ||| | |||| |||||  ||||||||||||||||||||||||| ||||    
T  7119867 gacttcaagttacacaaggaaggtagcttaaccttcaataaatcaggaactaaggagagaacctaa 7119802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 13460708 - 13460643
Alignment:
Q  181 gacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 246  Q
    ||||||||||||| |||||||  ||||| ||||   ||||||| ||||||||||||||||| ||||    
T  13460708 gacttcaagttacgcaaagaagagagcttaaccctcaataaattaggaactaaggagagaacctaa 13460643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 7127078 - 7127018
Alignment:
Q  181 gacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaa 241  Q
    ||||||||||||| ||| |||||||| | |||||  || ||| ||||||||||||||||||    
T  7127078 gacttcaagttacgcaaggaatggagtttaaccttcaacaaaccaggaactaaggagagaa 7127018  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 43429258 - 43429316
Alignment:
Q  182 acttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagaga 240  Q
    ||||||||||||||||||||  || || ||||||  |||||||||||| ||||||||||    
T  43429258 acttcaagttacacaaagaagagaacttaacctccgataaatcaggaattaaggagaga 43429316  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 43863138 - 43863203
Alignment:
Q  181 gacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 246  Q
    ||||||||||||||||| ||| ||||||| ||||  |||||| || |||||||||| |||| ||||    
T  43863138 gacttcaagttacacaaggaagggagctctaccttcaataaaccacgaactaaggaaagaacctaa 43863203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 43866610 - 43866666
Alignment:
Q  180 cgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaagga 236  Q
    ||||||||||||| |||| ||| ||| ||||||||  ||||||||| ||||||||||    
T  43866610 cgacttcaagttaaacaaggaagggaactcaaccttcaataaatcacgaactaagga 43866666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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