View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11953_low_23 (Length: 228)

Name: NF11953_low_23
Description: NF11953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11953_low_23
NF11953_low_23
[»] chr4 (15 HSPs)
chr4 (1-212)||(35969058-35969269)
chr4 (10-207)||(29677234-29677431)
chr4 (17-171)||(36627383-36627537)
chr4 (17-204)||(28125562-28125753)
chr4 (10-140)||(36910306-36910436)
chr4 (17-155)||(55966033-55966171)
chr4 (23-140)||(18364990-18365107)
chr4 (23-140)||(36597818-36597935)
chr4 (36-132)||(36636154-36636250)
chr4 (57-126)||(18083859-18083928)
chr4 (57-126)||(36616752-36616821)
chr4 (20-194)||(36612514-36612692)
chr4 (17-93)||(20211127-20211203)
chr4 (34-95)||(36642844-36642905)
chr4 (103-187)||(55116608-55116692)
[»] chr6 (2 HSPs)
chr6 (14-146)||(33839491-33839622)
chr6 (14-111)||(33843445-33843542)
[»] chr3 (1 HSPs)
chr3 (34-95)||(5356548-5356609)
[»] chr8 (1 HSPs)
chr8 (23-98)||(35336514-35336589)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 35969058 - 35969269
Alignment:
Q  1 tcaaattttgaggagtctcctatggttctattgagctggctgctagacctcgccaatgtaaaatcattgatagtctcttcaattactcttcaggtaccta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35969058 tcaaattttgaggagtctcctatggttctattgagctggctgctagacctcgccaatgtaaaatcattgatagtctcttcaattactcttcaggtaccta 35969157  T
Q  101 ggcatgttttgaagcattaattttactttcttgttaagattctttacgttatttcaaaattttgtttaaaattggttgacttgcataactgatcttattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35969158 ggcatgttttgaagcattaattttactttcttgttaagattctttacgttatttcaaaattttgtttaaaattggttgacttgcataactgatcttattt 35969257  T
Q  201 cactctcgttct 212  Q
    ||||||||||||    
T  35969258 cactctcgttct 35969269  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 10 - 207
Target Start/End: Original strand, 29677234 - 29677431
Alignment:
Q  10 gaggagtctcctatggttctattgagctggctgctagacctcgccaatgtaaaatcattgatagtctcttcaattactcttcaggtacctaggcatgttt 109  Q
    |||||| |||| |||||||||||||| ||||||| || ||| ||||||||||| ||||||| | ||||||||| |||||||||||||| | ||||||||     
T  29677234 gaggagcctccaatggttctattgagttggctgcaaggccttgccaatgtaaagtcattgacattctcttcaactactcttcaggtacattggcatgttc 29677333  T
Q  110 tgaagcattaattttactttcttgttaagattctttacgttatttcaaaattttgtttaaaattggttgacttgcataactgatcttatttcactctc 207  Q
     ||  | |||||||||| |||||||||| ||||| || |||||||||    | ||||||||||   ||||  ||||||||||||||||||||||||||    
T  29677334 cgagactttaattttaccttcttgttaatattctgtatgttatttcatgtatctgtttaaaatcaattgatatgcataactgatcttatttcactctc 29677431  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 36627537 - 36627383
Alignment:
Q  17 ctcctatggttctattgagctggctgctagacctcgccaatgtaaaatcattgatagtctcttcaattactcttcaggtacctaggcatgttttgaagca 116  Q
    |||||||||||||||| | |||||||| |||  |  ||||||||||||||||||| || || |||| |||||| ||||||||| | |||||||| | ||     
T  36627537 ctcctatggttctatttaactggctgcgagaatttaccaatgtaaaatcattgattgtttcctcaactactctgcaggtaccttgtcatgttttaaggct 36627438  T
Q  117 ttaattttactttcttgttaagattctttacgttatttcaaaattttgtttaaaa 171  Q
    |||||||| ||||||| |||||||||||||  ||||||| |||||||||||||||    
T  36627437 ttaatttttctttcttcttaagattctttattttatttctaaattttgtttaaaa 36627383  T

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Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 28125562 - 28125753
Alignment:
Q  17 ctcctatggttctattgagctggctgctagacctcgccaatgtaaaatcattgatagtctcttcaattactcttcaggtacctaggcatgttttgaagca 116  Q
    |||| |||||||||||||| |||||||||| ||| ||||| ||||| ||||||| | ||||||||| |||||||||||||| | ||||||||  |   |     
T  28125562 ctccaatggttctattgagttggctgctaggccttgccaaagtaaagtcattgacattctcttcaactactcttcaggtacattggcatgttccgggact 28125661  T
Q  117 ttaattttactttcttgttaagattctttacgttatttcaaaattttgt----ttaaaattggttgacttgcataactgatcttatttcact 204  Q
    ||||||||||||||||||||||||||| || | |||||||    |||||    |||||||   ||||| |||||||||||||||||||||||    
T  28125662 ttaattttactttcttgttaagattctgtatggtatttcatgtatttgtttaattaaaatcaattgacatgcataactgatcttatttcact 28125753  T

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Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 36910306 - 36910436
Alignment:
Q  10 gaggagtctcctatggttctattgagctggctgctagacctcgccaatgtaaaatcattgatagtctcttcaattactcttcaggtacctaggcatgttt 109  Q
    ||||| ||| ||||||||||||| |||| ||||| |||||| ||||||||| ||||||||  |||| |||||| |||||||||||||||| | |||||||    
T  36910306 gaggattctgctatggttctattaagcttgctgcaagaccttgccaatgtagaatcattggcagtcacttcaactactcttcaggtaccttgtcatgttt 36910405  T
Q  110 tgaagcattaattttactttcttgttaagat 140  Q
    | |||| ||| |||||||||||| |||||||    
T  36910406 tcaagctttatttttactttcttcttaagat 36910436  T

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Target: chr4; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 55966171 - 55966033
Alignment:
Q  17 ctcctatggttctattgagctggctgctagacctcgccaatgtaaaatcattgatagtctcttcaattactcttcaggtacctaggcatgttttgaagca 116  Q
    |||||||||||||||||||||||||||||||||| || | ||||| |||||||| |||||||| ||  ||||||||||||||| ||||||  || | ||     
T  55966171 ctcctatggttctattgagctggctgctagaccttgctagtgtaagatcattgaaagtctctttaacaactcttcaggtaccttggcatgaatttatgct 55966072  T
Q  117 ttaattttactttcttgttaagattctttacgttatttc 155  Q
    | |||||||| ||| | ||| |||||||||  |||||||    
T  55966071 tcaattttacattcatcttaggattctttattttatttc 55966033  T

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Target: chr4; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 18364990 - 18365107
Alignment:
Q  23 tggttctattgagctggctgctagacctcgccaatgtaaaatcattgatagtctcttcaattactcttcaggtacctaggcatgttttgaagcattaatt 122  Q
    |||||||||| |||||||||| |||||| ||||||||| ||||||||  |||| |||||| |||||||||||| ||| | |||||||| || | ||  ||    
T  18364990 tggttctattaagctggctgcaagaccttgccaatgtagaatcattggcagtcacttcaactactcttcaggttccttgtcatgttttaaacctttgttt 18365089  T
Q  123 ttactttcttgttaagat 140  Q
    |||||||||| |||||||    
T  18365090 ttactttcttcttaagat 18365107  T

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Target: chr4; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 36597935 - 36597818
Alignment:
Q  23 tggttctattgagctggctgctagacctcgccaatgtaaaatcattgatagtctcttcaattactcttcaggtacctaggcatgttttgaagcattaatt 122  Q
    |||||||||| |||||||||| |||||| ||||||||| ||||||||  |||| |||||| |||||||||||| ||| | |||||||| || | ||  ||    
T  36597935 tggttctattaagctggctgcaagaccttgccaatgtagaatcattggcagtcacttcaactactcttcaggttccttgtcatgttttaaacctttgttt 36597836  T
Q  123 ttactttcttgttaagat 140  Q
    |||||||||| |||||||    
T  36597835 ttactttcttcttaagat 36597818  T

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Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 36636250 - 36636154
Alignment:
Q  36 ctggctgctagacctcgccaatgtaaaatcattgatagtctcttcaattactcttcaggtacctaggcatgttttgaagcattaattttactttctt 132  Q
    |||||||||| |||| |||||||||||||||||||| |||||||||| |||||||| ||||  |  | |||||||||||| ||||| ||||| ||||    
T  36636250 ctggctgctaaaccttgccaatgtaaaatcattgatggtctcttcaactactcttcgggtatgtttgaatgttttgaagctttaatattactctctt 36636154  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 18083859 - 18083928
Alignment:
Q  57 tgtaaaatcattgatagtctcttcaattactcttcaggtacctaggcatgttttgaagcattaattttac 126  Q
    |||||||||||||| |||||||||||||||||| ||||||||| |||||| |||||  | ||||||||||    
T  18083859 tgtaaaatcattgaaagtctcttcaattactctccaggtaccttggcatgatttgagactttaattttac 18083928  T

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Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 36616821 - 36616752
Alignment:
Q  57 tgtaaaatcattgatagtctcttcaattactcttcaggtacctaggcatgttttgaagcattaattttac 126  Q
    |||||||||||||| |||||||||||||||||| ||||||||| |||||| |||||  | ||||||||||    
T  36616821 tgtaaaatcattgaaagtctcttcaattactctccaggtaccttggcatgatttgagactttaattttac 36616752  T

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Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 36612692 - 36612514
Alignment:
Q  20 ctatggttctattgagctggctgctagacctcgccaatgtaaaatcattgatagtctcttcaattactcttcaggtacctaggcatgttttgaag-catt 118  Q
    ||||| ||||| | || ||||||| ||| || ||| ||||||||||||||| ||| ||||||| |||||||||||||| | | |||||||| | |   ||    
T  36612692 ctatgcttctactcagttggctgcaagatcttgccgatgtaaaatcattgacagtttcttcaactactcttcaggtactttgtcatgttttcaggttttt 36612593  T
Q  119 aattttact---ttcttgttaagattctttacgttatttcaaaattttgtttaaaattggttgacttgcataactgatc 194  Q
     ||||||||   ||||| |||||||||||||  |||| || |||||||||| ||||||  ||||||||| ||| |||||    
T  36612592 tattttactttcttcttattaagattctttattttatgtctaaattttgttaaaaattaattgacttgcctaaatgatc 36612514  T

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Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 20211203 - 20211127
Alignment:
Q  17 ctcctatggttctattgagctggctgctagacctcgccaatgtaaaatcattgatagtctcttcaattactcttcag 93  Q
    |||| |||||||||||||  ||| |||||| ||| ||||||||||| ||||||| | ||||||||| ||||||||||    
T  20211203 ctccaatggttctattgatttggttgctaggccttgccaatgtaaagtcattgacattctcttcaaatactcttcag 20211127  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 36642905 - 36642844
Alignment:
Q  34 agctggctgctagacctcgccaatgtaaaatcattgatagtctcttcaattactcttcaggt 95  Q
    ||||||||||||||| | || |||||| ||||||| | |||| |||||| ||||||||||||    
T  36642905 agctggctgctagactttgcgaatgtagaatcatttagagtcacttcaactactcttcaggt 36642844  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 55116692 - 55116608
Alignment:
Q  103 catgttttgaagcattaattttactttcttgttaagattctttacgttatttcaaaattttgtttaaaattggttgacttgcata 187  Q
    |||||||| | ||||||||||  ||||||| |||||||||||||  ||||| | ||||  ||||||||||   ||||||||||||    
T  55116692 catgttttcacgcattaatttccctttcttcttaagattctttattttattcctaaatcctgtttaaaatcaattgacttgcata 55116608  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 146
Target Start/End: Complemental strand, 33839622 - 33839491
Alignment:
Q  14 agtctcctatggttctattgagctggctgctagacctcgccaatgtaaaatcattgatagtctcttcaattactcttcaggtacctaggcatgttttgaa 113  Q
    ||||||||||| ||||||| ||||||||||||||||| || ||  || ||||||| | ||||||||||| |||||||||||||| | |||||| |||||     
T  33839622 agtctcctatgattctattcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggtactttggcatgatttgag 33839523  T
Q  114 gcattaattttactttcttgttaagattcttta 146  Q
    || ||  |||||| ||| | |||||||||||||    
T  33839522 gc-tttgttttacattcatcttaagattcttta 33839491  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 33843542 - 33843445
Alignment:
Q  14 agtctcctatggttctattgagctggctgctagacctcgccaatgtaaaatcattgatagtctcttcaattactcttcaggtacctaggcatgttttg 111  Q
    ||||||||||| |||||||  |||||||||||||||| || ||  || ||||||| | |||| ||||||  ||||||||||||||| |||||| ||||    
T  33843542 agtctcctatgattctattatgctggctgctagaccttgctaacttagaatcattaacagtcacttcaaaaactcttcaggtaccttggcatgatttg 33843445  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 5356548 - 5356609
Alignment:
Q  34 agctggctgctagacctcgccaatgtaaaatcattgatagtctcttcaattactcttcaggt 95  Q
    |||||||||||||| || |||||| |||||||||||| ||||||||| | ||||||||||||    
T  5356548 agctggctgctagagcttgccaatataaaatcattgacagtctcttctaatactcttcaggt 5356609  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 35336514 - 35336589
Alignment:
Q  23 tggttctattgagctggctgctagacctcgccaatgtaaaatcattgatagtctcttcaattactcttcaggtacc 98  Q
    |||||||||| | |||||||| ||||||  |||||||| ||||||||| |  | ||||||||||||||||||||||    
T  35336514 tggttctattaacctggctgcgagaccttaccaatgtagaatcattgacaaccacttcaattactcttcaggtacc 35336589  T

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