View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11953_low_3 (Length: 652)
Name: NF11953_low_3
Description: NF11953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11953_low_3 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 599; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 18 - 640
Target Start/End: Complemental strand, 11849182 - 11848560
Alignment:
| Q |
18 |
aactctccggtctgatggaatgttcaactttaagtttggaatccaagcacacccccacataaccctctccaacaaaagctcaattagttacattattaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849182 |
aactctccggtctgatggaatgttcaactttaagtttggaatccaagcacacccccacataaccctctccaacaaaagctcaattagttacattattaat |
11849083 |
T |
|
| Q |
118 |
attactccaaatagaaagaatacctccactattaccttcggaaggaagaaacgtccaattacaatcctcccttccccataaattttgacaaaaagaagtc |
217 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849082 |
attactctaaatagaaagaatacctccactattaccttcggaaggaagaaacgcccaattacaatcctcccttccccataaattttgacaaaaagaagtc |
11848983 |
T |
|
| Q |
218 |
gaaatctcctccatcttcgtctcttgaatagccaaaaaatcaaccttattacttcgcactaaatctttaatgttattttctttgaaacacccccaagcct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11848982 |
gaaatctcctccatcttcgtctcttgaatagccaaaaaatcaaccttattacttcgcactaaatctttaatgttattttctttgaaacacccccaagcct |
11848883 |
T |
|
| Q |
318 |
ttaatattaaaggttgtaattatcattggataccccatcttctctcccttatgaccttcttatccacatctgcaacctccatattttccaacctatcctt |
417 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
11848882 |
ttaatattaaaggttgtaattatcattggatacccgatcttctctcccttatgaccttcttatccacatctgcaacctgcatattttccaccctatcctt |
11848783 |
T |
|
| Q |
418 |
attttccttccccggtgtagtgaacgaaaatcccatcacattttgcctctcaaacaatgatgaagcctccaacttcttcaaaggatctatttccccattc |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11848782 |
attttccttccccggtgtagtgaacgaaaatcccatcacattttgcctctcaaacaatgatgaagcctccaacttcttcaaaggatctatttccccattc |
11848683 |
T |
|
| Q |
518 |
atcaaagatgattccggtacttgggtgacttcttcatcaagaataagtctaaaccccgatgatggagaaaccgccatcccggacccgttgccactatcat |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11848682 |
atcaaagatgattccggtacttgggtgacttcttcatcaagaataagtctaaaccccgatgatggagaaaccgccatcccggacccgttgccactatcat |
11848583 |
T |
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| Q |
618 |
ctttcttcctcccactctgtctc |
640 |
Q |
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|||||||||||||||| |||||| |
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| T |
11848582 |
ctttcttcctcccactatgtctc |
11848560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 8507784 - 8507857
Alignment:
| Q |
122 |
ctccaaatagaaagaatacctccactattaccttcggaaggaagaaacgtccaattacaatcctcccttcccca |
195 |
Q |
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||||||||||| ||||| || |||||||||||||||||||| |||| ||||| |||||| || |||||||| |
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| T |
8507784 |
ctccaaatagatagaattccaccactattaccttcggaaggtctaaactcccaatcacaatcatcacttcccca |
8507857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 50433348 - 50433316
Alignment:
| Q |
236 |
gtctcttgaatagccaaaaaatcaaccttatta |
268 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
50433348 |
gtctcttgaatagccaaaaaatcaacattatta |
50433316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 9e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 57 - 345
Target Start/End: Complemental strand, 12169665 - 12169375
Alignment:
| Q |
57 |
aatccaagcacacccccacataaccctctccaacaaaagctcaattagttacattattaatattactccaaatagaaagaatacctccactattaccttc |
156 |
Q |
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||||||| |||||||||||||||||||||||||||||| ||||||| ||| ||| |||||||||||||| |||||||||||| | |||||||| |
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| T |
12169665 |
aatccaaacacacccccacataaccctctccaacaaaaatagaattagtagtattgttagagttactccaaatagagagaatacctccattgttaccttc |
12169566 |
T |
|
| Q |
157 |
ggaaggaagaaacgtccaattacaatcctcccttccccataaattttgacaaaaagaagtcgaaatctcctccatcttcgtctcttgaatagccaaaaaa |
256 |
Q |
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|||||| ||||| | ||||| ||||||| ||| ||||||||| || ||||||||| | || || ||||||||| ||||| ||||||||||||||||| |
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| T |
12169565 |
ggaagggagaaaagcccaatcacaatccacccctccccataacttgtgacaaaaattatccgtaacctcctccattttcgtttcttgaatagccaaaaat |
12169466 |
T |
|
| Q |
257 |
tcaaccttattacttcgcactaaatctttaatgttatt-ttctttgaaaca-cccccaagcctttaatattaaaggttgtaattatcattg |
345 |
Q |
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| T |
12169465 |
tccaccttattgtttcgcattaattctctaattttgttcctctttgaagcaccccccaaacctctaatattaaaggttgtgatgatcattg |
12169375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 29074612 - 29074650
Alignment:
| Q |
18 |
aactctccggtctgatggaatgttcaactttaagtttgg |
56 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
29074612 |
aactctccggtctgatggaatgttcaactttaagtttgg |
29074650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 68868 - 68792
Alignment:
| Q |
119 |
ttactccaaatagaaagaatacctccactattaccttcggaaggaagaaacgtccaattacaatcctcccttcccca |
195 |
Q |
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|||||||||| || | |||||||| |||||| || ||||||||||| ||||||||| ||||||||||| |||||| |
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| T |
68868 |
ttactccaaagcgataaaatacctcaactatttccaacggaaggaagatacgtccaatcacaatcctcccctcccca |
68792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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