View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11953_low_4 (Length: 580)
Name: NF11953_low_4
Description: NF11953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11953_low_4 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Complemental strand, 28609193 - 28608655
Alignment:
| Q |
1 |
ctgaataagatatagaatcattgctgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgtttctcactatccattaccat |
100 |
Q |
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| T |
28609193 |
ctgaataagatatagaatcattgttgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgcttctcactatccattacaat |
28609094 |
T |
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| Q |
101 |
agataatatgccccttgctttatcatgacttgtggtgtccactattgcagctttaccaaacaagagcatccgaaccactagaagttgggttcctaagtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28609093 |
agataatatgccccttgctttatcatgacttgtggtgtccactattgcagctttaccaaacaggagcatccgaaccactagaagttgggttcctaagtgt |
28608994 |
T |
|
| Q |
201 |
cctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagat |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608993 |
cctgtcatcctccatgcgacagataatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagat |
28608894 |
T |
|
| Q |
301 |
tacgatcaacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccgg |
400 |
Q |
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| T |
28608893 |
tacgatcaacaaataatcccacagagcaaggtgcactttgcatcacattcaagtttatatctttgaacgcaacatcagttgtttcaaatgcaccttccgg |
28608794 |
T |
|
| Q |
401 |
acttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaaca |
500 |
Q |
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| T |
28608793 |
acttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcgtgaatggttgcatattcggacacaaca |
28608694 |
T |
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| Q |
501 |
tttaacgtttctactctgatagcatcatatgcctctctg |
539 |
Q |
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| T |
28608693 |
tttaacgtttctactctgatagcatcatatgcctctctg |
28608655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 536
Target Start/End: Original strand, 437711 - 438246
Alignment:
| Q |
1 |
ctgaataagatatagaatcattgctgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgtttctcactatccattaccat |
100 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| || |
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| T |
437711 |
ctgaataagatatagaatcattgttgttcatcgctgtcaatctaaatccattcacatactcatcatctaactccttctgcttctcactatccattacaat |
437810 |
T |
|
| Q |
101 |
agataatatgccccttgctttatcatgacttgtggtgtccactattgcagctttaccaaacaagagcatccgaaccactagaagttgggttcctaagtgt |
200 |
Q |
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| T |
437811 |
agatagtatcccttgtggttcagcatgacttgaggtgtctactatttcagcattatcaaacaggagcatccgaaccactgataattgggttcctatgcgt |
437910 |
T |
|
| Q |
201 |
cctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagat |
300 |
Q |
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| T |
437911 |
cctgccattctccatgcaacagctaaggcttcgcgatcatcaggaccaccaacaaagatcatacaaatacgaaaatttaaagttggtaatgacccaagat |
438010 |
T |
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| Q |
301 |
tacgatcaacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccgg |
400 |
Q |
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||| || ||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||| | ||| || ||||||||| | ||||||||| | |
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| T |
438011 |
cacggtccacaaatattcccacagagcaaggtgcactttgcatcacattcaagtttatatctttgtatgcagtattagttgtttcgagtgcaccttctga |
438110 |
T |
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| Q |
401 |
acttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaaca |
500 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |||||| ||| | | |||||||| ||||| |||||||||||||| | ||||||||| |
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| T |
438111 |
acttagttgtttgtggaatggaaggagaatcaaacttgtacatttttcattagccgagttgtatatatcttcgtgaatggttgcatagtttgacacaaca |
438210 |
T |
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| Q |
501 |
tttaacgtttctactctgatagcatcatatgcctct |
536 |
Q |
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|||| |||| ||||| |||||||||||||||||| |
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| T |
438211 |
tttagtgtttggactctaatagcatcatatgcctct |
438246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 157 - 537
Target Start/End: Complemental strand, 13660408 - 13660028
Alignment:
| Q |
157 |
caaacaagagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaa |
256 |
Q |
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||||||||||||||||||||| | | | |||||||| ||| || |||||||||||| |||||||| ||||| |||||||||||||||||| ||| |
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| T |
13660408 |
caaacaagagcatccgaaccaatgataatcgggttcctgggtgccccaccatcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaa |
13660309 |
T |
|
| Q |
257 |
gatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttg |
356 |
Q |
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|||||||||||| ||||| |||||||||| || ||||||||||||||||||||||| | |||||| |||||||||| | |||||||||||||| ||| |
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| T |
13660308 |
gatcatacaaattcgaaagttcatttttgttattgacccaagattacgatcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggttt |
13660209 |
T |
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| Q |
357 |
atatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaacta |
456 |
Q |
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| T |
13660208 |
atatctttgtatgcaacactagttgtttcgagtgcacctaatgaacttaagtgtttatggaatggaagtataatcatgcttgtgcgtttttcattagcag |
13660109 |
T |
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| Q |
457 |
aattgtatatgtcttcctgaatggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctc |
537 |
Q |
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| T |
13660108 |
agttatatatgtcctcatgaatggttgaataggatgacacaacatttaaggtttcgactctgacagcatcatatgcctctc |
13660028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 206 - 505
Target Start/End: Complemental strand, 13652859 - 13652560
Alignment:
| Q |
206 |
catcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacga |
305 |
Q |
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| T |
13652859 |
catcctccatgcaacagttaaggcttcatggtcatcagggccaccaacaaatatcatacaaattcgaaagttcattttcggtaatgtcccaagattacga |
13652760 |
T |
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| Q |
306 |
tcaacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccggactta |
405 |
Q |
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| T |
13652759 |
tcaacaaagattcccacagagcaaggtgcagtttgcatcacattcaggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaactta |
13652660 |
T |
|
| Q |
406 |
gttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaa |
505 |
Q |
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||||| ||||||||||| | ||||| |||||| |||||||| ||| || |||| |||||||| || |||||||||||||| |||||||||||||| |
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| T |
13652659 |
agtgtttatggaatggaagtataatcatgcttgtgtgtttttcattagctgaattatatatgtcctcgtgaatggttgcataggatgacacaacatttaa |
13652560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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