View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11953_low_6 (Length: 437)

Name: NF11953_low_6
Description: NF11953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11953_low_6
NF11953_low_6
[»] chr1 (3 HSPs)
chr1 (1-421)||(18991113-18991533)
chr1 (52-149)||(4439820-4439917)
chr1 (52-152)||(4428591-4428691)
[»] chr3 (18 HSPs)
chr3 (1-421)||(41985537-41985963)
chr3 (1-419)||(41980763-41981190)
chr3 (58-155)||(9494861-9494958)
chr3 (48-155)||(9617516-9617623)
chr3 (52-155)||(9407326-9407429)
chr3 (52-155)||(9397745-9397848)
chr3 (52-148)||(9425533-9425629)
chr3 (94-155)||(9343847-9343908)
chr3 (100-155)||(9336548-9336603)
chr3 (94-155)||(9448316-9448377)
chr3 (100-155)||(9329844-9329899)
chr3 (58-152)||(9614009-9614103)
chr3 (61-155)||(9655410-9655504)
chr3 (55-152)||(9347950-9348047)
chr3 (55-152)||(9369604-9369701)
chr3 (58-155)||(9441834-9441931)
chr3 (61-155)||(9646417-9646511)
chr3 (256-296)||(9756535-9756575)
[»] chr8 (2 HSPs)
chr8 (246-421)||(13170468-13170643)
chr8 (70-327)||(44688663-44688923)
[»] chr2 (1 HSPs)
chr2 (57-152)||(20694357-20694452)
[»] chr6 (2 HSPs)
chr6 (62-155)||(7041466-7041559)
chr6 (70-155)||(7046817-7046902)
[»] chr5 (1 HSPs)
chr5 (58-161)||(33541618-33541721)


Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 18991113 - 18991533
Alignment:
Q  1 tccaagtcaaaaacacacatcccacatcgcatgttatcaaaagggatgaacgcatcgtcaataaagacgacacaattccctttgacaacagataaatcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18991113 tccaagtcaaaaacacacatcccacatcgcatgttatcaaaagggatgaacgcatcgtcaataaagacgacacaattccctttgacaacagataaatcag 18991212  T
Q  101 aagcagaagcataaaaagaacatccattccccaagaacaaaaccctatcccctaagctcttcgacctccattccttcttcctctcattaagcctaaacac 200  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18991213 aagcagaagcagaaaacgaacatccattccccaagaacaaaaccctattccctaagctcttcgacctccattccttctttctctcattaagcctaaacac 18991312  T
Q  201 cttcagttttagacctttttcgccaggaaacccaaaacaatgcgagtcacagatgtccactagcaacaactcaccttcacactctaccaagaatttcatg 300  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18991313 cttcagttttagacctttttcgccagggaacccaaaacaatgcgagtcacagatgtccactagcaacaactcaccttcacactctaccaagaatttcata 18991412  T
Q  301 tcccctccattcacatattcagccactaactcgacactatagtccaatccaaacgcaaccgtccgaccaattttattaaccgcataaaaccgctctttaa 400  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  18991413 tcccctccattcacatattcagccactaactcaacactatagtccaatccaaacgcaactgtcctaccaattttattaaccgcataaaaccgctctttaa 18991512  T
Q  401 acacgcagatgtctagaaagt 421  Q
    |||||||||||||||||||||    
T  18991513 acacgcagatgtctagaaagt 18991533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 4439820 - 4439917
Alignment:
Q  52 gcatcgtcaataaagacgacacaattccctttgacaacagataaatcagaagcagaagcataaaaagaacatccattccccaagaacaaaaccctatc 149  Q
    ||||| |||||||||| |||||||||||||||   |||| | ||||| |||||||||||| |||| ||||||||||||||||| ||||||||||||||    
T  4439820 gcatcatcaataaagatgacacaattccctttagaaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatc 4439917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 4428591 - 4428691
Alignment:
Q  52 gcatcgtcaataaagacgacacaattccctttgacaacagataaatcagaagcagaagcataaaaagaacatccattccccaagaacaaaaccctatccc 151  Q
    ||||| |||||||||| |||||||||||||||   |||||| || ||||||||||| ||| ||||  |||||||||||||||| ||||||||||||||||    
T  4428591 gcatcatcaataaagatgacacaattccctttagtaacagacaactcagaagcagaggcagaaaacaaacatccattccccaaaaacaaaaccctatccc 4428690  T
Q  152 c 152  Q
    |    
T  4428691 c 4428691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 41985537 - 41985963
Alignment:
Q  1 tccaagtcaaaaacacacatcccacatcgcatgttatcaaaagggatgaacgcatcgtcaataaagacgacacaattccctttgacaacagataaatcag 100  Q
    ||||||| ||||||||||||||||||  |||| |  ||||||  |  ||| ||||| ||| |||||| ||||||||| |||||||||||||| ||||| |    
T  41985537 tccaagtgaaaaacacacatcccacaaagcatctggtcaaaatcgtagaatgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccg 41985636  T
Q  101 aagcagaagcataaaaagaacatccattccccaagaacaaaaccctatcccctaagctcttcgacct---ccattccttcttcctctcattaagcctaaa 197  Q
    ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||  | || |   ||||| ||||| | |||||| ||| || ||    
T  41985637 aagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaa 41985736  T
Q  198 caccttcagttttagacctttttcgccaggaaacccaaaacaatgcgagtcacagatgtccactagcaacaact---caccttcacactctaccaagaat 294  Q
    ||| |  || |||| ||| | ||| || || || ||||||||||| |||||| | ||||| |||||||||||||   |||| |||| |||||||| ||||    
T  41985737 cacatcaagctttaaaccatcttcaccggggaaaccaaaacaatgagagtcatatatgtctactagcaacaactgatcaccctcactctctaccaggaat 41985836  T
Q  295 ttcatgtcccctccattcacatattcagccactaactcgacactatagtccaatccaaacgcaaccgtccgaccaattttattaaccgcataaaaccgct 394  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||  |||||| ||||| ||||  |||||||||||||| ||| ||||||| |    
T  41985837 ttcatgtcccctccatccacatattcagccaataactcgacactatagtccggtccaaaagcaactgtcctgccaattttattaactgcacaaaaccggt 41985936  T
Q  395 ctttaaacacgcagatgtctagaaagt 421  Q
    |||||||||||||||||||||||||||    
T  41985937 ctttaaacacgcagatgtctagaaagt 41985963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 41980763 - 41981190
Alignment:
Q  1 tccaagtcaaaaacacacatcccacatcgcatgttatcaaaagggatgaacgcatcgtcaataaagacgacacaattccctttgacaacagataaatcag 100  Q
    ||||||| ||||| ||||||||||||| |||| || | |||||||| ||| |||||  ||| |||||  | |||||| |||||||||||||| ||||  |    
T  41980763 tccaagtgaaaaatacacatcccacatagcattttgttaaaagggaggaatgcatcaccaacaaagataatacaatttcctttgacaacagacaaatttg 41980862  T
Q  101 aagcagaagcataaaaagaacatccattccccaagaacaaaaccctatcccctaagctcttcgacct---ccattccttcttcctctcattaagcctaaa 197  Q
    ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| ||| || || |   ||||| |||||   ||| |  |||||||||    
T  41980863 aagcagaagcaaaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgtcaacttgacccatttcttctctttcttagcaagcctaaa 41980962  T
Q  198 caccttcagttttagacctttttcgccaggaaacccaaaacaatgcgagtcacagatgtccactagcaacaactcaccttcacactctaccaagaatttc 297  Q
    ||| |  || || | ||| | ||| ||||| ||||||| |||||| |||| | | |||||||||||||| || ||||| |||| |||||||| |||||||    
T  41980963 cacatcaagattgaaaccatcttcaccagggaacccaacacaatgagagtgataaatgtccactagcaataattcaccctcactctctaccaggaatttc 41981062  T
Q  298 atgtcc---cctccattcac---atattcagccactaactcgacactatagtccaatccaaacgcaaccgtccgaccaattttattaaccgcataaaacc 391  Q
    |  |||   ||||||| |||   ||||||||||||||||| ||||||||||||   ||||| |||||  |||||||||  |||||| ||| || |||| |    
T  41981063 acatcccctcctccatacaccaaatattcagccactaactggacactatagtctggtccaatcgcaaatgtccgaccacctttattgaccacacaaaatc 41981162  T
Q  392 gctctttaaacacgcagatgtctagaaa 419  Q
     || |||||| || ||||||||| ||||    
T  41981163 tctttttaaatacacagatgtcttgaaa 41981190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 58 - 155
Target Start/End: Complemental strand, 9494958 - 9494861
Alignment:
Q  58 tcaataaagacgacacaattccctttgacaacagataaatcagaagcagaagcataaaaagaacatccattccccaagaacaaaaccctatcccctaa 155  Q
    |||||||||| ||||||||||||||||  |||  | |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  9494958 tcaataaagatgacacaattccctttggaaacgcacaaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctatcccctaa 9494861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 48 - 155
Target Start/End: Complemental strand, 9617623 - 9617516
Alignment:
Q  48 gaacgcatcgtcaataaagacgacacaattccctttgacaacagataaatcagaagcagaagcataaaaagaacatccattccccaagaacaaaacccta 147  Q
    |||||||||||||||||||| ||||||||||||||||  |||| | ||||| |||||||||||| |||| |||||||||||| | | |||||||||||||    
T  9617623 gaacgcatcgtcaataaagatgacacaattccctttggaaacacacaaatctgaagcagaagcagaaaatgaacatccattcacaaggaacaaaacccta 9617524  T
Q  148 tcccctaa 155  Q
    ||||||||    
T  9617523 tcccctaa 9617516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 9407326 - 9407429
Alignment:
Q  52 gcatcgtcaataaagacgacacaattccctttgacaacagataaatcagaagcagaagcataaaaagaacatccattccccaagaacaaaaccctatccc 151  Q
    ||||| |||||||||| |||||||||||||||| ||||| | ||||| ||||| |||||| |||| |||||||||||| | |||||||||||||||||||    
T  9407326 gcatcatcaataaagaagacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctatccc 9407425  T
Q  152 ctaa 155  Q
    ||||    
T  9407426 ctaa 9407429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 9397745 - 9397848
Alignment:
Q  52 gcatcgtcaataaagacgacacaattccctttgacaacagataaatcagaagcagaagcataaaaagaacatccattccccaagaacaaaaccctatccc 151  Q
    ||||| ||||||||||||||||||||||||||| ||||| | |||||  |||| |||||  |||| |||||||||||| | |||||||| ||||||||||    
T  9397745 gcatcatcaataaagacgacacaattccctttggcaacacacaaatccaaagctgaagcggaaaatgaacatccattcacaaagaacaagaccctatccc 9397844  T
Q  152 ctaa 155  Q
    ||||    
T  9397845 ctaa 9397848  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 52 - 148
Target Start/End: Original strand, 9425533 - 9425629
Alignment:
Q  52 gcatcgtcaataaagacgacacaattccctttgacaacagataaatcagaagcagaagcataaaaagaacatccattccccaagaacaaaaccctat 148  Q
    ||||| || ||||||| |||||||||||||||| ||||| | ||||| ||||| |||||| |||| |||||||||||| | ||||||||||||||||    
T  9425533 gcatcatcgataaagatgacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctat 9425629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 9343847 - 9343908
Alignment:
Q  94 aaatcagaagcagaagcataaaaagaacatccattccccaagaacaaaaccctatcccctaa 155  Q
    ||||| |||||||||||| |||| |||||| ||||||||||||||||||| |||||||||||    
T  9343847 aaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaa 9343908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 9336548 - 9336603
Alignment:
Q  100 gaagcagaagcataaaaagaacatccattccccaagaacaaaaccctatcccctaa 155  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| |||| |||||    
T  9336548 gaagcagaagcagaaaacgaacatccattccccaagaacaaaaccttatctcctaa 9336603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 9448316 - 9448377
Alignment:
Q  94 aaatcagaagcagaagcataaaaagaacatccattccccaagaacaaaaccctatcccctaa 155  Q
    ||||| |||||||||||| |||| |||||  ||||||||||||||||||| |||||||||||    
T  9448316 aaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaa 9448377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 9329844 - 9329899
Alignment:
Q  100 gaagcagaagcataaaaagaacatccattccccaagaacaaaaccctatcccctaa 155  Q
    |||||||||||| |||| ||| ||||||||||||||||||||||| |||| |||||    
T  9329844 gaagcagaagcagaaaacgaatatccattccccaagaacaaaaccttatctcctaa 9329899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 9614103 - 9614009
Alignment:
Q  58 tcaataaagacgacacaattccctttgacaacagataaatcagaagcagaagcataaaaagaacatccattccccaagaacaaaaccctatcccc 152  Q
    ||||||||||  |||||||| ||||||  || | | | ||| |||||||||||| |||| ||||||||| |||||||||| |||||| |||||||    
T  9614103 tcaataaagataacacaatttcctttggtaagacacagatctgaagcagaagcagaaaatgaacatccactccccaagaaaaaaaccatatcccc 9614009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 155
Target Start/End: Complemental strand, 9655504 - 9655410
Alignment:
Q  61 ataaagacgacacaattccctttgacaacagataaatcagaagcagaagcataaaaagaacatccattccccaagaacaaaaccctatcccctaa 155  Q
    ||||||||||  ||||||||||||  |||| | ||||| ||||| || ||| |||| |||||||| |  ||||| ||||||||||||||||||||    
T  9655504 ataaagacgatgcaattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgcccaaaaacaaaaccctatcccctaa 9655410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 9347950 - 9348047
Alignment:
Q  55 tcgtcaataaagacgacacaattccctttgacaacagataaatcagaagcagaagcataaaaagaacatccattccccaagaacaaaaccctatcccc 152  Q
    ||||||||||||||||||||||| |||||   || | ||| ||| |||||||||||| |||| |||||||||  ||| | ||| |||| |||||||||    
T  9347950 tcgtcaataaagacgacacaatttcctttcggaatacatagatctgaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatcccc 9348047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 9369604 - 9369701
Alignment:
Q  55 tcgtcaataaagacgacacaattccctttgacaacagataaatcagaagcagaagcataaaaagaacatccattccccaagaacaaaaccctatcccc 152  Q
    ||||||||||||||||||||||| |||||   || | ||| ||| |||||||||||| |||| |||||||||  ||| | ||| |||| |||||||||    
T  9369604 tcgtcaataaagacgacacaatttcctttcggaatacatagatctgaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatcccc 9369701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 155
Target Start/End: Complemental strand, 9441931 - 9441834
Alignment:
Q  58 tcaataaagacgacacaattccctttgacaacagataaatcagaagcagaagcataaaaagaacatccattccccaagaacaaaaccctatcccctaa 155  Q
    ||||||||||| ||  ||||||||||||||||| | | |||  | || |||||| |||| ||||||  |||| | |||||||||||||||||||||||    
T  9441931 tcaataaagacaacggaattccctttgacaacacacatatccaaggctgaagcagaaaatgaacatttattcacaaagaacaaaaccctatcccctaa 9441834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 155
Target Start/End: Complemental strand, 9646511 - 9646417
Alignment:
Q  61 ataaagacgacacaattccctttgacaacagataaatcagaagcagaagcataaaaagaacatccattccccaagaacaaaaccctatcccctaa 155  Q
    ||||||||||  ||||||||||||  |||| | ||||| ||||| || ||| |||| |||||||| |  || || ||||||||||||||||||||    
T  9646511 ataaagacgatgcaattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgccaaaaaacaaaaccctatcccctaa 9646417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 9756535 - 9756575
Alignment:
Q  256 tccactagcaacaactcaccttcacactctaccaagaattt 296  Q
    ||||||||||||||||||| ||||| ||| |||||||||||    
T  9756535 tccactagcaacaactcacattcactctccaccaagaattt 9756575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 246 - 421
Target Start/End: Complemental strand, 13170643 - 13170468
Alignment:
Q  246 gtcacagatgtccactagcaacaactcaccttcacactctaccaagaatttcatgtcccctccattcacatattcagccactaactcgacactatagtcc 345  Q
    |||| ||||||||||||||||||||||||| || | ||| ||||||||||||||||||||||||| ||||||||||| || |||||| ||||||| | ||    
T  13170643 gtcatagatgtccactagcaacaactcaccctcgctctcgaccaagaatttcatgtcccctccatccacatattcagtcaataactcaacactatcgccc 13170544  T
Q  346 aatccaaacgcaaccgtccgaccaattttattaaccgcataaaaccgctctttaaacacgcagatgtctagaaagt 421  Q
      |||||| ||||| ||||||||||||||||| || ||| ||||||| |||||||||| |||||| |||| |||||    
T  13170543 ggtccaaaagcaactgtccgaccaattttattgactgcacaaaaccgatctttaaacatgcagatatctaaaaagt 13170468  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 70 - 327
Target Start/End: Complemental strand, 44688923 - 44688663
Alignment:
Q  70 acacaattccctttgacaacagataaatcagaagcagaagcataaaaagaacatccattccccaagaacaaaaccctatcccctaagctcttcgacct-- 167  Q
    ||||||||||||||| ||| ||| ||||| ||||||| || | |||| ||| || ||||||||||||||||||  |||| |||||| ||| |  || |      
T  44688923 acacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgttaacttta 44688824  T
Q  168 -ccattccttcttcctctcattaagcctaaacaccttcagttttagacctttttcgccaggaaacccaaaacaatgcgagtcacagatgtccactagcaa 266  Q
     ||||| ||| | | ||||||| ||| | ||||| |  ||   |||||| | ||| || || |||||||||| ||| |||||| ||||||||||||||||    
T  44688823 cccatttcttatgcttctcattgagcgtgaacacatcaagccgtagaccatcttcacccgggaacccaaaaccatgagagtcatagatgtccactagcaa 44688724  T
Q  267 caactcaccttcacactctaccaagaatttcatgtcccctccattcacatattcagccact 327  Q
    |||||||||||||| |||||||| |||||| |||||||||||||  |||| || |||||||    
T  44688723 caactcaccttcactctctaccaggaattttatgtcccctccatcaacatgtttagccact 44688663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 57 - 152
Target Start/End: Complemental strand, 20694452 - 20694357
Alignment:
Q  57 gtcaataaagacgacacaattccctttgacaacagataaatcagaagcagaagcataaaaagaacatccattccccaagaacaaaaccctatcccc 152  Q
    ||||||||||| |||||||||||||||| ||||| | ||||| |||||||||||| |||| ||||||||||||||||| |||||||||||||||||    
T  20694452 gtcaataaagatgacacaattccctttggcaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatcccc 20694357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 155
Target Start/End: Original strand, 7041466 - 7041559
Alignment:
Q  62 taaagacgacacaattccctttgacaacagataaatcagaagcagaagcataaaaagaacatccattccccaagaacaaaaccctatcccctaa 155  Q
    |||||| |||||||||||||||| ||||  | ||||| ||||||||| || | || |||||| | |  ||||||||||||||||||||||||||    
T  7041466 taaagatgacacaattccctttggcaacgcacaaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaa 7041559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 7046817 - 7046902
Alignment:
Q  70 acacaattccctttgacaacagataaatcagaagcagaagcataaaaagaacatccattccccaagaacaaaaccctatcccctaa 155  Q
    ||||||||||||||| ||||| | ||||| |||  ||||||| |||| ||||||    ||||||||||||||||  ||||||||||    
T  7046817 acacaattccctttggcaacatacaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccctaa 7046902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 33541618 - 33541721
Alignment:
Q  58 tcaataaagacgacacaattccctttgacaacagataaatcagaagcagaagcataaaaagaacatccattccccaagaacaaaaccctatcccctaagc 157  Q
    |||| ||||| ||||||||| |||||| |||| || |||||||||||||| ||| |||| |||||  ||  ||| |||||||||||  |||| ||||| |    
T  33541618 tcaaaaaagaggacacaattacctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaac 33541717  T
Q  158 tctt 161  Q
    ||||    
T  33541718 tctt 33541721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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