View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11954_high_12 (Length: 338)

Name: NF11954_high_12
Description: NF11954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11954_high_12
NF11954_high_12
[»] chr3 (4 HSPs)
chr3 (12-338)||(21588832-21589158)
chr3 (59-330)||(2980156-2980428)
chr3 (196-335)||(39873282-39873421)
chr3 (272-330)||(13982169-13982227)
[»] chr2 (1 HSPs)
chr2 (32-335)||(34112805-34113109)
[»] chr4 (7 HSPs)
chr4 (39-290)||(48303310-48303562)
chr4 (59-290)||(12430803-12431035)
chr4 (59-330)||(12437267-12437539)
chr4 (59-290)||(29331646-29331878)
chr4 (59-290)||(42409113-42409345)
chr4 (59-290)||(912767-912999)
chr4 (56-157)||(13755289-13755390)
[»] chr8 (3 HSPs)
chr8 (59-290)||(27681545-27681777)
chr8 (59-290)||(37207716-37207948)
chr8 (59-330)||(21245642-21245914)
[»] chr6 (1 HSPs)
chr6 (59-290)||(23425488-23425720)
[»] chr1 (3 HSPs)
chr1 (59-290)||(28517280-28517512)
chr1 (59-290)||(38989106-38989338)
chr1 (272-330)||(33494477-33494535)
[»] chr7 (3 HSPs)
chr7 (59-330)||(29183491-29183763)
chr7 (32-267)||(1492365-1492599)
chr7 (250-330)||(32147027-32147106)
[»] scaffold0258 (1 HSPs)
scaffold0258 (59-330)||(1191-1464)


Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 12 - 338
Target Start/End: Original strand, 21588832 - 21589158
Alignment:
Q  12 ataggtccaaaagtcttttgcttgtaaagcgagtttatttctcattcaattgcctctttccattttggccaattcccactttgtatagaatctttgatag 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21588832 ataggtccaaaagtcttttgcttgtaaagcgagtttatttctcattcaattgcctctttccattttggccaattcccactttgtatagaatctttgatag 21588931  T
Q  112 actttggttcataatcctcgttatcaattatcacatttagcactatatgtatagcaaaagaatcgtcaatgttgaatacttccagttccattgtattcca 211  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21588932 actttggttcatgatcctcgttatcaattatcacatttagcactatacgtatagcaaaagaatcgtcaatgttgaatacttccagttccattgtattcca 21589031  T
Q  212 ttagtgacctaatttattcatatctctttattttcatgaatttaaggtatctgatcagtctcttctagaactgaaatatcatttatgtctgaagattctt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  21589032 ttagtgacctaatttattcatatctctttattttcatgaatttaaggtttctgatcagtctcttcaagaactgaaatatgatttatgtctgaagattctt 21589131  T
Q  312 ttagagtatttatatcctcacttgagc 338  Q
    |||||||||||||||||||||||||||    
T  21589132 ttagagtatttatatcctcacttgagc 21589158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 59 - 330
Target Start/End: Original strand, 2980156 - 2980428
Alignment:
Q  59 aattgcctctttccattttggccaattcccactttgtatagaatctttgatagactttggttcataatcctcgttatcaattatcacatttagcactata 158  Q
    |||||| ||||||||||||||||||||| | ||||||||| ||||||| |||||| ||||||||| | ||||||||||| | || ||||||||| |||||    
T  2980156 aattgcatctttccattttggccaattctcgctttgtatacaatctttaatagaccttggttcatgaacctcgttatcactcatgacatttagcgctata 2980255  T
Q  159 tgtata-gcaaaagaatcgtcaatgttgaatac-ttccagttccattgtattccattagtgacctaatttattcatatctctttattttcatgaatttaa 256  Q
    | |||| ||||||  ||| |||| ||||| | | |  | |||||||||||||||||| ||||| ||||||||  | ||||||| ||||||||| |||| |    
T  2980256 t-tatatgcaaaaatatcatcaacgttgacttcatgtcggttccattgtattccattggtgacataatttatggagatctcttgattttcatgtatttca 2980354  T
Q  257 ggtatctgatcagtctcttctagaactgaaatatcatttatgtctgaagattcttttagagtatttatatcctc 330  Q
    |||| ||||| ||  |||||| ||||||||||||   ||||||| ||||  ||||||| ||| | |||||||||    
T  2980355 ggtacctgattaggttcttctggaactgaaatattgattatgtcagaaggctcttttaaagtttctatatcctc 2980428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 196 - 335
Target Start/End: Complemental strand, 39873421 - 39873282
Alignment:
Q  196 gttccattgtattccattagtgacctaatttattcatatctctttattttcatgaatttaaggtatctgatcagtctcttctagaactgaaatatcattt 295  Q
    ||||||||||||||||||| |||| ||||||||| | ||||||||||||| |||||||| ||||| ||| |||  ||||||| |||||||||| ||| ||    
T  39873421 gttccattgtattccattattgacataatttattgagatctctttattttaatgaatttcaggtacctgttcaacctcttctggaactgaaatttcaatt 39873322  T
Q  296 atgtctgaagattcttttagagtatttatatcctcacttg 335  Q
    ||| ||||||| ||||| ||||| | || |||||||||||    
T  39873321 atgcctgaagactctttcagagtttctacatcctcacttg 39873282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 13982169 - 13982227
Alignment:
Q  272 tcttctagaactgaaatatcatttatgtctgaagattcttttagagtatttatatcctc 330  Q
    |||||||||||||||| |||| ||||||| ||| | ||||||||||| |||||||||||    
T  13982169 tcttctagaactgaaaaatcaattatgtcagaaaactcttttagagtttttatatcctc 13982227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 32 - 335
Target Start/End: Original strand, 34112805 - 34113109
Alignment:
Q  32 cttgtaaagcgagtttatttctcattcaattgcctctttccattttggccaattcccactttgtatagaatctttgatagactttggttcataatcctcg 131  Q
    |||||||||||| |||| |||   ||||||||||||||||||||||||||||||| |||||||| || ||| |||||||||||||||||||| ||| |||    
T  34112805 cttgtaaagcgattttaattcagcttcaattgcctctttccattttggccaattctcactttgtctacaatatttgatagactttggttcatgatcgtcg 34112904  T
Q  132 ttatcaattatcacatttagcactatatg-tatagcaaaagaatcgtcaatgttgaatactt-ccagttccattgtattccattagtgacctaatttatt 229  Q
     ||||| ||||||||||||||  |||||| ||| ||||||| |||||||| ||||| |  ||  | |||||||||||||| || | || | |||||||||    
T  34112905 ctatcatttatcacatttagcgttatatgatat-gcaaaagcatcgtcaacgttgactctttgtcggttccattgtattctatgactggcataatttatt 34113003  T
Q  230 catatctctttattttcatgaatttaaggtatctgatcagtctcttctagaactgaaatatcatttatgtctgaagattcttttagagtatttatatcct 329  Q
     | |||||||||||||||||||||| ||||| |||||||||||||| | |||||||||| ||| |||| || ||||| ||||||||||| | || |||||    
T  34113004 gagatctctttattttcatgaatttcaggtacctgatcagtctcttttggaactgaaatttcaattatatcggaagactcttttagagtttctacatcct 34113103  T
Q  330 cacttg 335  Q
    ||||||    
T  34113104 cacttg 34113109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 39 - 290
Target Start/End: Original strand, 48303310 - 48303562
Alignment:
Q  39 agcgagtttatttctcattcaattgcctctttccattttggccaattcccactttgtatagaatctttgatagactttggttcataatcctcgttatcaa 138  Q
    |||||||||| ||||  ||||||||| ||||||||||||||||||||| ||||||||  | ||||||| |||||| ||||||||| |||||||||||||     
T  48303310 agcgagtttaattctgcttcaattgcatctttccattttggccaattctcactttgtcgacaatctttaatagaccttggttcatgatcctcgttatcat 48303409  T
Q  139 ttatcacatttagcactatatgtata-gcaaaagaatcgtcaatgttgaatac-ttccagttccattgtattccattagtgacctaatttattcatatct 236  Q
     ||||||||||||| |||| | |||| ||||||  |||||||| ||||| | | |  | |||||||||||||||||||||||  ||||||||| | ||||    
T  48303410 ctatcacatttagcgctatgt-tatatgcaaaaatatcgtcaacgttgacttcatgtcggttccattgtattccattagtgaaataatttattgagatct 48303508  T
Q  237 ctttattttcatgaatttaaggtatctgatcagtctcttctagaactgaaatat 290  Q
    ||| ||||||||| || | ||||| ||||||||  |||||| ||||||||||||    
T  48303509 cttgattttcatgtatgtcaggtacctgatcagcttcttctggaactgaaatat 48303562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 59 - 290
Target Start/End: Original strand, 12430803 - 12431035
Alignment:
Q  59 aattgcctctttccattttggccaattcccactttgtatagaatctttgatagactttggttcataatcctcgttatcaattatcacatttagcactata 158  Q
    |||||| ||||||||||||||||||||| | |||||| || ||||||| |||||| ||||||||| ||||||||||||| | || ||||||||| |||||    
T  12430803 aattgcatctttccattttggccaattctcgctttgtttacaatctttaatagaccttggttcatgatcctcgttatcattcattacatttagcgctata 12430902  T
Q  159 tgtata-gcaaaagaatcgtcaatgttgaatac-ttccagttccattgtattccattagtgacctaatttattcatatctctttattttcatgaatttaa 256  Q
    | |||| ||||||  |||||||| ||||| | | |  | |||||||||||||||||||||||| ||||||||| | ||||||| ||||||||| || | |    
T  12430903 t-tatatgcaaaaatatcgtcaacgttgacttcatgtcggttccattgtattccattagtgacataatttattgagatctcttgattttcatgtatgtca 12431001  T
Q  257 ggtatctgatcagtctcttctagaactgaaatat 290  Q
    |||| ||||||||  |||||| ||||||||||||    
T  12431002 ggtacctgatcagcttcttctggaactgaaatat 12431035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 59 - 330
Target Start/End: Original strand, 12437267 - 12437539
Alignment:
Q  59 aattgcctctttccattttggccaattcccactttgtatagaatctttgatagactttggttcataatcctcgttatcaattatcacatttagcactata 158  Q
    |||||| ||||||||||||||||||||| | |||||| || ||||||| |||||| ||||||||| ||||||||||||| | |||||||||||| |||||    
T  12437267 aattgcatctttccattttggccaattctcgctttgtctacaatctttaatagaccttggttcatgatcctcgttatcactcatcacatttagcgctata 12437366  T
Q  159 tgtata-gcaaaagaatcgtcaatgttgaatac-ttccagttccattgtattccattagtgacctaatttattcatatctctttattttcatgaatttaa 256  Q
    | |||| ||||||  |||||||| ||||| | | |  | |||||||||||||||||| ||||| ||||||||  | ||||||| ||||||||| |||| |    
T  12437367 t-tatatgcaaaaatatcgtcaacgttgacttcatgtcggttccattgtattccattggtgacataatttatggagatctcttgattttcatgtatttca 12437465  T
Q  257 ggtatctgatcagtctcttctagaactgaaatatcatttatgtctgaagattcttttagagtatttatatcctc 330  Q
    |||| ||||| ||  |||||| ||||||||||||   ||||||| ||||  ||||||| ||| | |||||||||    
T  12437466 ggtacctgattaggttcttctggaactgaaatattgattatgtcagaaggctcttttaaagtttctatatcctc 12437539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 59 - 290
Target Start/End: Complemental strand, 29331878 - 29331646
Alignment:
Q  59 aattgcctctttccattttggccaattcccactttgtatagaatctttgatagactttggttcataatcctcgttatcaattatcacatttagcactata 158  Q
    |||||| ||||||||||||||||||||| | |||||| || ||||||| |||||| ||||||||| ||||||||||||| | || ||||||||| |||||    
T  29331878 aattgcatctttccattttggccaattctcgctttgtttacaatctttaatagaccttggttcatgatcctcgttatcattcattacatttagcgctata 29331779  T
Q  159 tgtata-gcaaaagaatcgtcaatgttgaatac-ttccagttccattgtattccattagtgacctaatttattcatatctctttattttcatgaatttaa 256  Q
    | |||| ||||||  |||||||| ||||| | | |  | |||||||||||||||||||||||| ||||||||| | ||||||| ||||||||| || | |    
T  29331778 t-tatatgcaaaaatatcgtcaacgttgacttcatgtcggttccattgtattccattagtgacataatttattgagatctcttgattttcatgtatgtca 29331680  T
Q  257 ggtatctgatcagtctcttctagaactgaaatat 290  Q
    |||| ||||||||  |||||| ||||||||||||    
T  29331679 ggtacctgatcagcttcttctggaactgaaatat 29331646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 59 - 290
Target Start/End: Complemental strand, 42409345 - 42409113
Alignment:
Q  59 aattgcctctttccattttggccaattcccactttgtatagaatctttgatagactttggttcataatcctcgttatcaattatcacatttagcactata 158  Q
    |||||| ||||||||||||||||||||| | |||||| || ||||||| |||||| ||||||||| ||||||||||||| | || ||||||||| |||||    
T  42409345 aattgcatctttccattttggccaattctcgctttgtttacaatctttaatagaccttggttcatgatcctcgttatcattcattacatttagcgctata 42409246  T
Q  159 tgtata-gcaaaagaatcgtcaatgttgaatac-ttccagttccattgtattccattagtgacctaatttattcatatctctttattttcatgaatttaa 256  Q
    | |||| ||||||  |||||||| ||||| | | |  | |||||||||||||||||||||||| ||||||||| | ||||||| ||||||||| || | |    
T  42409245 t-tatatgcaaaaatatcgtcaacgttgacttcatgtcggttccattgtattccattagtgacataatttattgagatctcttgattttcatgtatgtca 42409147  T
Q  257 ggtatctgatcagtctcttctagaactgaaatat 290  Q
    |||| ||||||||  |||||| ||||||||||||    
T  42409146 ggtacctgatcagcttcttctggaactgaaatat 42409113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 59 - 290
Target Start/End: Original strand, 912767 - 912999
Alignment:
Q  59 aattgcctctttccattttggccaattcccactttgtatagaatctttgatagactttggttcataatcctcgttatcaattatcacatttagcactata 158  Q
    |||||| ||||||||||||||||||||| | |||||| || ||||||| |||||| ||||||||| ||||||||||||| | || |||||||||  ||||    
T  912767 aattgcatctttccattttggccaattctcgctttgtttacaatctttaatagaccttggttcatgatcctcgttatcattcattacatttagcgttata 912866  T
Q  159 tgtata-gcaaaagaatcgtcaatgttgaatac-ttccagttccattgtattccattagtgacctaatttattcatatctctttattttcatgaatttaa 256  Q
    | |||| ||||||  |||||||| ||||| | | |  | |||||||||||||||||||||||| ||||||||| | ||||||| ||||||||| ||   |    
T  912867 t-tatatgcaaaaatatcgtcaacgttgacttcatgtcggttccattgtattccattagtgacataatttattgagatctcttgattttcatgtatgcca 912965  T
Q  257 ggtatctgatcagtctcttctagaactgaaatat 290  Q
    |||| ||||||||  |||||| ||||||||||||    
T  912966 ggtacctgatcagcttcttctggaactgaaatat 912999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 13755289 - 13755390
Alignment:
Q  56 ttcaattgcctctttccattttggccaattcccactttgtatagaatctttgatagactttggttcataatcctcgttatcaattatcacatttagcact 155  Q
    ||||||||| ||||||||||||| ||||||| | |||||| || ||||||| |||||| |    |||  ||||||||||||| || ||||||||||| ||    
T  13755289 ttcaattgcatctttccattttgcccaattctcgctttgtctacaatcttttatagacctctaatcacgatcctcgttatcatttgtcacatttagcgct 13755388  T
Q  156 at 157  Q
    ||    
T  13755389 at 13755390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 59 - 290
Target Start/End: Original strand, 27681545 - 27681777
Alignment:
Q  59 aattgcctctttccattttggccaattcccactttgtatagaatctttgatagactttggttcataatcctcgttatcaattatcacatttagcactata 158  Q
    |||||| ||||||||||||||||||||| | |||||| || ||||||| |||||| ||||||||| ||||||||||||| | || ||||||||| |||||    
T  27681545 aattgcatctttccattttggccaattctcgctttgtttacaatctttaatagaccttggttcatgatcctcgttatcattcattacatttagcgctata 27681644  T
Q  159 tgtata-gcaaaagaatcgtcaatgttgaatac-ttccagttccattgtattccattagtgacctaatttattcatatctctttattttcatgaatttaa 256  Q
    | |||| ||||||  | |||||| ||||| | | |  |||||||||||||||||||||||||| ||||||||| | ||||||| ||||||||| || | |    
T  27681645 t-tatatgcaaaaataccgtcaacgttgacttcatgtcagttccattgtattccattagtgacataatttattgagatctcttgattttcatgtatgtca 27681743  T
Q  257 ggtatctgatcagtctcttctagaactgaaatat 290  Q
    |||| ||||||||  |||||| ||||||||||||    
T  27681744 ggtacctgatcagcttcttctggaactgaaatat 27681777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 59 - 290
Target Start/End: Complemental strand, 37207948 - 37207716
Alignment:
Q  59 aattgcctctttccattttggccaattcccactttgtatagaatctttgatagactttggttcataatcctcgttatcaattatcacatttagcactata 158  Q
    |||||| ||||||||||||||||||||| | |||||| || ||||||| |||||| ||||||||| ||||||||||||| | || ||||||||| |||||    
T  37207948 aattgcatctttccattttggccaattctcgctttgtttacaatctttaatagaccttggttcatgatcctcgttatcattcattacatttagcgctata 37207849  T
Q  159 tgtata-gcaaaagaatcgtcaatgttgaatac-ttccagttccattgtattccattagtgacctaatttattcatatctctttattttcatgaatttaa 256  Q
    | |||| ||||||  |||||||| ||||| | | |  | |||||||||||||||||||||||| ||||||||| | ||||||| ||||||||| || | |    
T  37207848 t-tatatgcaaaaatatcgtcaacgttgacttcatgtcggttccattgtattccattagtgacataatttattgagatctcttgattttcatgtatgtca 37207750  T
Q  257 ggtatctgatcagtctcttctagaactgaaatat 290  Q
    |||| ||||||||  |||||| ||||||||||||    
T  37207749 ggtacctgatcagcttcttctggaactgaaatat 37207716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 59 - 330
Target Start/End: Complemental strand, 21245914 - 21245642
Alignment:
Q  59 aattgcctctttccattttggccaattcccactttgtatagaatctttgatagactttggttcataatcctcgttatcaattatcacatttagcactata 158  Q
    |||||| ||||||||||||||||||||| | |||||| || ||||||| |||||| ||||||||| ||||||||||||| | |||||||||||| |||||    
T  21245914 aattgcatctttccattttggccaattctcgctttgtctacaatctttaatagaccttggttcatgatcctcgttatcactcatcacatttagcgctata 21245815  T
Q  159 tgtata-gcaaaagaatcgtcaatgttgaatac-ttccagttccattgtattccattagtgacctaatttattcatatctctttattttcatgaatttaa 256  Q
    | |||| ||||||  |||||||| ||||| | | |  | |||||||||| ||||| | ||||| ||||||||  | ||||||| ||||||||| |||| |    
T  21245814 t-tatatgcaaaaatatcgtcaacgttgacttcatgtcggttccattgtcttccactggtgacataatttatggagatctcttgattttcatgtatttca 21245716  T
Q  257 ggtatctgatcagtctcttctagaactgaaatatcatttatgtctgaagattcttttagagtatttatatcctc 330  Q
    |||| ||||| ||  |||||| ||||||||||||   ||||||| ||||  ||||||| ||| | |||||||||    
T  21245715 ggtacctgattaggttcttctggaactgaaatattgattatgtcagaaggctcttttaaagtttctatatcctc 21245642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 59 - 290
Target Start/End: Complemental strand, 23425720 - 23425488
Alignment:
Q  59 aattgcctctttccattttggccaattcccactttgtatagaatctttgatagactttggttcataatcctcgttatcaattatcacatttagcactata 158  Q
    |||||| ||||||||||||||||||||| | |||||| || ||||||| |||||| ||||||||| ||||||||||||| | || ||||||||| |||||    
T  23425720 aattgcatctttccattttggccaattctcgctttgtttacaatctttaatagaccttggttcatgatcctcgttatcattcattacatttagcgctata 23425621  T
Q  159 tgtata-gcaaaagaatcgtcaatgttgaatac-ttccagttccattgtattccattagtgacctaatttattcatatctctttattttcatgaatttaa 256  Q
    | |||| ||||||  |||||||| ||||| | | |  | |||||||||||||||||||||||| ||||||||| | ||||||| ||||||||| || | |    
T  23425620 t-tatatgcaaaaatatcgtcaacgttgacttcatgtcggttccattgtattccattagtgacataatttattgagatctcttgattttcatgtatgtca 23425522  T
Q  257 ggtatctgatcagtctcttctagaactgaaatat 290  Q
    |||| ||||||||  |||||| ||||||||||||    
T  23425521 ggtacctgatcagcttcttctggaactgaaatat 23425488  T

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Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 59 - 290
Target Start/End: Complemental strand, 28517512 - 28517280
Alignment:
Q  59 aattgcctctttccattttggccaattcccactttgtatagaatctttgatagactttggttcataatcctcgttatcaattatcacatttagcactata 158  Q
    |||||| ||||||||||||||||||||| | |||||| || ||||||| |||||| ||||||||| ||||||||||||| | || ||||||||| |||||    
T  28517512 aattgcatctttccattttggccaattctcgctttgtttacaatctttaatagaccttggttcatgatcctcgttatcattcattacatttagcgctata 28517413  T
Q  159 tgtata-gcaaaagaatcgtcaatgttgaatac-ttccagttccattgtattccattagtgacctaatttattcatatctctttattttcatgaatttaa 256  Q
    | |||| ||||||  |||||||| ||||| | | |  | |||||||||||||||||||||||| ||||||||| | ||||||| ||||||||| || | |    
T  28517412 t-tatatgcaaaaatatcgtcaacgttgacttcatgtcggttccattgtattccattagtgacataatttattgagatctcttgattttcatgtatgtca 28517314  T
Q  257 ggtatctgatcagtctcttctagaactgaaatat 290  Q
    |||| ||||||||  |||||| ||||||||||||    
T  28517313 ggtacctgatcagcttcttctggaactgaaatat 28517280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 59 - 290
Target Start/End: Complemental strand, 38989338 - 38989106
Alignment:
Q  59 aattgcctctttccattttggccaattcccactttgtatagaatctttgatagactttggttcataatcctcgttatcaattatcacatttagcactata 158  Q
    |||||| ||||||||||||||||||||| | |||||| || ||||||| |||||| ||||||||| ||||||||||||| | || ||||||||| |||||    
T  38989338 aattgcatctttccattttggccaattctcgctttgtttacaatctttaatagaccttggttcatgatcctcgttatcattcattacatttagcgctata 38989239  T
Q  159 tgtata-gcaaaagaatcgtcaatgttgaatac-ttccagttccattgtattccattagtgacctaatttattcatatctctttattttcatgaatttaa 256  Q
    | |||| ||||||  |||||||| ||||| | | |  | |||||||||||||||||||||||| ||||||||| | ||||||| ||||||||| || | |    
T  38989238 t-tatatgcaaaaatatcgtcaacgttgacttcatgtcggttccattgtattccattagtgacataatttattgagatctcttgattttcatgtatgtca 38989140  T
Q  257 ggtatctgatcagtctcttctagaactgaaatat 290  Q
    |||| ||||||||  |||||| ||||||||||||    
T  38989139 ggtacctgatcagcttcttctggaactgaaatat 38989106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 33494477 - 33494535
Alignment:
Q  272 tcttctagaactgaaatatcatttatgtctgaagattcttttagagtatttatatcctc 330  Q
    |||||||||||||||| |||| ||||||| ||| | ||||||||||| | |||||||||    
T  33494477 tcttctagaactgaaaaatcaattatgtcagaaaactcttttagagtttctatatcctc 33494535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 59 - 330
Target Start/End: Complemental strand, 29183763 - 29183491
Alignment:
Q  59 aattgcctctttccattttggccaattcccactttgtatagaatctttgatagactttggttcataatcctcgttatcaattatcacatttagcactata 158  Q
    |||||| ||||||||||||||||||||| | |||||| || ||||||| |||||| ||||||||| ||||||||||||| | |||||||||||| |||||    
T  29183763 aattgcatctttccattttggccaattctcgctttgtctacaatctttaatagaccttggttcatgatcctcgttatcactcatcacatttagcgctata 29183664  T
Q  159 tgtata-gcaaaagaatcgtcaatgttgaatac-ttccagttccattgtattccattagtgacctaatttattcatatctctttattttcatgaatttaa 256  Q
    | |||| ||||||  |||||||| ||||| | | |  | |||||||||||||||||| ||||| ||||||||  | ||||||| ||||||||| |||| |    
T  29183663 t-tatatgcaaaaatatcgtcaacgttgacttcatgtcggttccattgtattccattggtgacataatttatggagatctcttgattttcatgtatttca 29183565  T
Q  257 ggtatctgatcagtctcttctagaactgaaatatcatttatgtctgaagattcttttagagtatttatatcctc 330  Q
    |||  ||||| ||  |||||| ||||||||||||   ||||||| ||||  ||||||| ||| | |||||||||    
T  29183564 ggtgcctgattaggttcttctggaactgaaatattgattatgtcagaaggctcttttaaagtttctatatcctc 29183491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 267
Target Start/End: Complemental strand, 1492599 - 1492365
Alignment:
Q  32 cttgtaaagcgagtttatttctcattcaattgcctctttccattttggccaattcccactttgtatagaatctttgatagactttggttcataatcctcg 131  Q
    ||||| ||||||||||| || |  ||||||||| ||||| ||||||||||||||| |  ||||| || ||||||  |||| | ||||||||| |||||||    
T  1492599 cttgttaagcgagtttaattttgcttcaattgcatcttttcattttggccaattctcgttttgtttaaaatcttcaatagtccttggttcatgatcctcg 1492500  T
Q  132 ttatcaattatcacatttagcactatatgtata-gcaaaagaatcgtcaatgttgaat--acttccagttccattgtattccattagtgacctaatttat 228  Q
     ||| | ||||||| ||||||||||||| |||| ||||||  ||| |||| ||||| |  || || |   || |||||||||||||||||| ||||||||    
T  1492499 ctataatttatcacgtttagcactatat-tatatgcaaaaatatcatcaacgttgatttcacctcaa---ccgttgtattccattagtgacataatttat 1492404  T
Q  229 tcatatctctttattttcatgaatttaaggtatctgatc 267  Q
      | |||||||||||||| |||| || ||||| ||||||    
T  1492403 caagatctctttattttcgtgaaattcaggtacctgatc 1492365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 330
Target Start/End: Complemental strand, 32147106 - 32147027
Alignment:
Q  250 aatttaaggtatctgatcagtctcttctagaactgaaatatcatttatgtctgaagattcttttagagtatttatatcctc 330  Q
    ||||| ||||| ||||| ||| |||||| ||||||||| |||| ||||||| ||| | ||||||||||| | |||||||||    
T  32147106 aatttcaggtacctgattagt-tcttctggaactgaaaaatcaattatgtcagaaaactcttttagagtttctatatcctc 32147027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 59 - 330
Target Start/End: Original strand, 1191 - 1464
Alignment:
Q  59 aattgcctctttccattttggccaattcccactttgtatagaatctttgatagactttggttcataatcctcgttatcaattatcacatttagcactata 158  Q
    |||||| ||||||||||||||||||||| | |||||| || ||||||| |||||| ||||||||| ||||||||||||| | |||||||||||| |||||    
T  1191 aattgcatctttccattttggccaattctcgctttgtttacaatctttaatagaccttggttcatgatcctcgttatcattcatcacatttagcgctata 1290  T
Q  159 -tgtatagcaaaagaatcgtcaatgttgaatac-ttccagttccattgtattccattagtgacctaatttattcatatctctttattttcatgaatttaa 256  Q
     | |||  |||||  |||||||| ||| | | | |  | |||||||||||||||||| ||||| ||||||||  | ||||||| ||||||||| |||| |    
T  1291 ttatatgccaaaaatatcgtcaacgtttacttcatgtcggttccattgtattccattggtgacataatttatggagatctcttgattttcatgtatttca 1390  T
Q  257 ggtatctgatcagtctcttctagaactgaaatatcatttatgtctgaagattcttttagagtatttatatcctc 330  Q
    |||| ||||| ||  |||||| ||||||||||||   ||||||| ||||  ||||||| ||| | |||||||||    
T  1391 ggtacctgattaggttcttctggaactgaaatattgattatgtcagaaggctcttttaaagtttctatatcctc 1464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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