View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11954_high_18 (Length: 238)
Name: NF11954_high_18
Description: NF11954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11954_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 21589378 - 21589604
Alignment:
| Q |
1 |
ttatattgatactcatttttatccatatattgaaattatgttcatatatttctatagaattatgtgtttggtgagatatttgctcacgtttattctatat |
100 |
Q |
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| T |
21589378 |
ttatattgatactcatttttatccatatattgaaattatgttcatatatttctatagaattatgtgtttggtgagatattttctcacgtttattctatat |
21589477 |
T |
|
| Q |
101 |
gtttgattcagtattggaatttacattgctcctggaggataatactttgatcaatggggtgtacacaatttatgttatactcatattt--tatgttatac |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
21589478 |
gtttgattcagtattggaatttacattgctcctggaggataatactttgatcaatggggtgtacacaatctatgttatactcatattttatatgttatac |
21589577 |
T |
|
| Q |
199 |
ttgatcaatatttcatgcaggtatgtg |
225 |
Q |
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||||| ||||||||||||||||||||| |
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| T |
21589578 |
ttgattaatatttcatgcaggtatgtg |
21589604 |
T |
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