View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11954_high_19 (Length: 238)
Name: NF11954_high_19
Description: NF11954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11954_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 12844247 - 12844459
Alignment:
| Q |
1 |
tctttggcgcgttcgttcttttctatcactgtaatcagaagaatgaaagaaacggttagcgcaatttggaatttcccgcgccaggattcatttataaaac |
100 |
Q |
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| T |
12844247 |
tctttggcgcgttcgttcttttctatcactgtaatcagaa---tgaaagaaacggttagcgcaatttggaatttcccgcgccaggattcatttataaaac |
12844343 |
T |
|
| Q |
101 |
ggttacaacaaccaatttcttcgtttcagagtttccacagnnnnnnnaaatttaatttatattaaaatgtaaaataaagttgcatttacttttaatattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12844344 |
ggttacaacaaccaatttcttcgtttcagagtttccacagttttttt--atttaatttatattaaaatgtaaaataaagtcgcatttacttttaatattg |
12844441 |
T |
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| Q |
201 |
gggtttaattatctatga |
218 |
Q |
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|||||||||| ||||||| |
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| T |
12844442 |
gggtttaattgtctatga |
12844459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 12861270 - 12861058
Alignment:
| Q |
1 |
tctttggcgcgttcgttcttttctatcactgtaatcagaagaatgaaagaaacggttagcgcaatttggaatttcccgcgccaggattcatttataaaac |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
12861270 |
tctttgtcgcgttcgttcttttctatcactgtaatcagaa---tgaaagaaacggttagagcaatttggaatttcccgcgccaggatttatttataaaac |
12861174 |
T |
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| Q |
101 |
ggttacaacaaccaatttcttcgtttcagagtttccacagnnnnnnnaaatttaatttatattaaaatgtaaaataaagttgcatttacttttaatattg |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12861173 |
ggttgtaacaaccaatttcttcgtttcagagtttccacagttttttt-tatttaatttatattaaaatgtaaaataaagttgcatttacttttaatattg |
12861075 |
T |
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| Q |
201 |
gggtttaattatctatg |
217 |
Q |
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||||||||||||||||| |
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| T |
12861074 |
gggtttaattatctatg |
12861058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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