View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11954_high_2 (Length: 721)

Name: NF11954_high_2
Description: NF11954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11954_high_2
NF11954_high_2
[»] chr1 (6 HSPs)
chr1 (16-709)||(47636663-47637347)
chr1 (191-256)||(47619851-47619916)
chr1 (193-253)||(47584888-47584948)
chr1 (198-246)||(47628038-47628086)
chr1 (563-598)||(47627663-47627698)
chr1 (191-253)||(47575200-47575262)
[»] chr8 (2 HSPs)
chr8 (522-598)||(15981925-15982001)
chr8 (522-598)||(19148946-19149022)
[»] chr4 (1 HSPs)
chr4 (525-598)||(36437508-36437581)
[»] chr5 (1 HSPs)
chr5 (196-245)||(469430-469479)


Alignment Details
Target: chr1 (Bit Score: 654; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 16 - 709
Target Start/End: Complemental strand, 47637347 - 47636663
Alignment:
Q  16 cactaacagactaaacttttaaaatctcctcacgttttcaagctttggtattcaattggtagtagattgactaatttgtattgtcggcatgtttgaatca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47637347 cactaacagactaaacttttaaaatctcctcacgttttcaagctttggtattcaattggtagtagattgactaatttgtattgtcggcatgtttgaatca 47637248  T
Q  116 gttccactgtgtagaaaaaatgcaggctgcttaggtaccggtagcgtaacagtgaaactatctagcatgagcactactgttgccattgtaggtctatctt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47637247 gttccactgtgtagaaaaaatgcaggctgcttaggtaccggtagcgtaacagtgaaactatctagcatgagcactactgttgccattgtaggtctatctt 47637148  T
Q  216 ctggatcttcttggacacatagtaaaccaatatggatgcatctgatagcttcatttggagtataagattctcttactgtgtgatcaaccaattccaaggg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47637147 ctggatcttcttggacacatagtaaaccaatatggatgcatctgatagcttcatttggagtataagactctcttactgtgtgatcaaccaattccaaggg 47637048  T
Q  316 tgttccattcttccaaagtttccaggcctgtctcaaattttcatcaagtatttgttatgacatgatccctataaagtcggaaagactaaataaaatcaag 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47637047 tgttccattcttccaaagtttccaggcctgtctcaaattttcatcaagtatttgttatgacgtgatccctataaagtcggaaagactaaataaaatcaag 47636948  T
Q  416 aagcatagatttaaagctttctttactcacataggttactaaatcatcagcaacacctgtttcatagaaagagttgctcttcttgccacttataatctcc 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47636947 aagcatagatttaaagctttctttactcacataggttactaaatcatcagcaacacctgtttcatagaaagagttgctcttcttgccacttataatctcc 47636848  T
Q  516 ataacgaggactccaaaactgtatacatcagactttatcgagaactctccatgcattgcatactccggagacatgtaaccacttaaacacaaacacatat 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47636847 ataacgaggactccaaaactgtatacatcagactttatcgagaactctccatgcattgcatactccggagacatgtaaccacttaaacacaaacacatat 47636748  T
Q  616 ttatcattgctataaaacactatcatccacaaaaaggacaagtacttcaacaaatatatgtcgcatatataaacatgtacttactatgtgccta 709  Q
    |||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  47636747 ttatcattgctataaaacactatcatccacaaaaaggacaagtactt---------tatgtcgcatatataaacatgtacttactatgtgccta 47636663  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 47619916 - 47619851
Alignment:
Q  191 actgttgccattgtaggtctatcttctggatcttcttggacacatagtaaaccaatatggatgcat 256  Q
    ||||||||||||||||||||| | | ||||| |||||||||||||| ||||||||| || ||||||    
T  47619916 actgttgccattgtaggtctagcatttggattttcttggacacataataaaccaatttgaatgcat 47619851  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 47584948 - 47584888
Alignment:
Q  193 tgttgccattgtaggtctatcttctggatcttcttggacacatagtaaaccaatatggatg 253  Q
    |||||||||||||||||| || ||||||| |||||| |||||||  |||||||| ||||||    
T  47584948 tgttgccattgtaggtctgtcatctggattttcttgaacacataacaaaccaatgtggatg 47584888  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 47628086 - 47628038
Alignment:
Q  198 ccattgtaggtctatcttctggatcttcttggacacatagtaaaccaat 246  Q
    |||||||||| ||||| ||||||| |||||||||||| |||||||||||    
T  47628086 ccattgtaggcctatcatctggattttcttggacacaaagtaaaccaat 47628038  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 598
Target Start/End: Complemental strand, 47627698 - 47627663
Alignment:
Q  563 tccatgcattgcatactccggagacatgtaaccact 598  Q
    ||||||||||||||| ||||||||||||||||||||    
T  47627698 tccatgcattgcatattccggagacatgtaaccact 47627663  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 47575262 - 47575200
Alignment:
Q  191 actgttgccattgtaggtctatcttctggatcttcttggacacatagtaaaccaatatggatg 253  Q
    ||||||||||||||||| || |||||||||| ||| || |||||||  |||||||| ||||||    
T  47575262 actgttgccattgtaggcctgtcttctggattttcctgaacacataacaaaccaatgtggatg 47575200  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 522 - 598
Target Start/End: Original strand, 15981925 - 15982001
Alignment:
Q  522 aggactccaaaactgtatacatcagactttatcgagaactctccatgcattgcatactccggagacatgtaaccact 598  Q
    ||||||||||| ||||| |||||||||||| |||| ||  |||| | |||||||||||| |||||||||||||||||    
T  15981925 aggactccaaagctgtacacatcagactttgtcgaaaaaactccttccattgcatactctggagacatgtaaccact 15982001  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 522 - 598
Target Start/End: Original strand, 19148946 - 19149022
Alignment:
Q  522 aggactccaaaactgtatacatcagactttatcgagaactctccatgcattgcatactccggagacatgtaaccact 598  Q
    ||||||||||| ||||| |||||||||||| |||| ||  |||| | |||||||||||| |||||||||||||||||    
T  19148946 aggactccaaagctgtacacatcagactttgtcgaaaaaactccttccattgcatactctggagacatgtaaccact 19149022  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 525 - 598
Target Start/End: Original strand, 36437508 - 36437581
Alignment:
Q  525 actccaaaactgtatacatcagactttatcgagaactctccatgcattgcatactccggagacatgtaaccact 598  Q
    |||||||| ||||||||||||||||| | ||| || | ||| | ||| ||||||||||||||||| ||||||||    
T  36437508 actccaaagctgtatacatcagacttcaccgaaaattgtccttccatggcatactccggagacatataaccact 36437581  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 469430 - 469479
Alignment:
Q  196 tgccattgtaggtctatcttctggatcttcttggacacatagtaaaccaa 245  Q
    |||||||||||||||||| || |||| |||||| ||||||| ||||||||    
T  469430 tgccattgtaggtctatcatcaggattttcttgaacacataataaaccaa 469479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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