View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11954_high_21 (Length: 218)
Name: NF11954_high_21
Description: NF11954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11954_high_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 40998039 - 40997869
Alignment:
| Q |
1 |
cacattgttatgatttgtctatgcattaaaagattacatagcatatcatttattttacgttgcaatgactcatagactgaatcttgattcttcatgtttg |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40998039 |
cacattgtgatgatttgtctatgcattaaaa-attacagaacatatcatttattttacgttgcaatgactcatagactgaatcttgattcttcatgtttg |
40997941 |
T |
|
| Q |
101 |
attcaaaaaccaagagagcagtgctcatttcgcagaaatatataaacaataataatcaccattaaaaaatta |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40997940 |
attcaaaaaccaagagagcagtgctcatttcgcagaaatatataaacaataataatcaccattaaaaaatta |
40997869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University