View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11954_high_6 (Length: 475)

Name: NF11954_high_6
Description: NF11954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11954_high_6
NF11954_high_6
[»] chr3 (11 HSPs)
chr3 (14-457)||(39559469-39559912)
chr3 (100-351)||(50815338-50815595)
chr3 (100-351)||(50860269-50860526)
chr3 (120-379)||(49856455-49856714)
chr3 (190-311)||(49971649-49971770)
chr3 (193-328)||(49979261-49979391)
chr3 (121-246)||(49867974-49868099)
chr3 (94-350)||(49972939-49973195)
chr3 (273-380)||(49867865-49867974)
chr3 (369-420)||(50815602-50815653)
chr3 (369-420)||(50860211-50860262)
[»] scaffold0543 (2 HSPs)
scaffold0543 (121-383)||(1968-2230)
scaffold0543 (31-59)||(2380-2408)
[»] scaffold0492 (2 HSPs)
scaffold0492 (121-383)||(3514-3776)
scaffold0492 (31-59)||(3926-3954)
[»] chr7 (2 HSPs)
chr7 (126-401)||(19369773-19370044)
chr7 (186-247)||(19929351-19929412)


Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 14 - 457
Target Start/End: Original strand, 39559469 - 39559912
Alignment:
Q  14 gatggaacaatttcaatatttccccaaacttcaaactcttatcattcatgatgatgatgatatagtaaacagtagtgatgatgacgaagattgggaggat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39559469 gatggaacaatttcaatatttccccaaacttcaaactcttatcattcatgatgatgatgatatagtaaacagtagtgatgatgacgaagattgggaggat 39559568  T
Q  114 ccaactattgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaattttctaaatatataa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39559569 ccaactattgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaatttgctaaatatataa 39559668  T
Q  214 tgcagaattcaagagtattaaggaccatgacaattcagagtgccaaatccttagagtgcaatacaaagcaccaaatgttcatggaattatctttgtgccc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39559669 tgcagaattcaagagtattaaggaccatgacaattcagagtgccaaatccttagagtgcaatacaaagcaccaaatgttcatggaattatctttgtgccc 39559768  T
Q  314 aaaggtttcagccacatgccaacttttatttatttgaatcacaatgggtagagcatgcgtgcaatagcagcatccttaagcttatcaccaatatatttga 413  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39559769 aaaggtttcagccacatgccaacttttattcatttgaatcacaatgggtagagcatgcgtgcaatagcagcatccttaagcttgtcaccaatatatttga 39559868  T
Q  414 gactctactttattaattcattctcatatatcttttaccaaaat 457  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  39559869 gactctactttattaattcattctcgtatatcttttaccaaaat 39559912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 100 - 351
Target Start/End: Original strand, 50815338 - 50815595
Alignment:
Q  100 aagattgggaggatccaactattgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaatt 199  Q
    ||||||||||||| ||||| ||||||||||||||||| ||||||||||| | ||||||||| |||  ||||||||| ||||| || ||||||||||||||    
T  50815338 aagattgggaggacccaacaattgttccagaatgccttttatctcatcttacaacatgctcccttcgaaattatagtcgcatcaattgtgagtttcaatt 50815437  T
Q  200 ttctaaatatataatgcagaattcaagagtattaaggaccatgacaattcagagtgccaaatccttagagtgcaatacaaagcaccaaatgttcatggaa 299  Q
    | |||| ||||| || | ||||||||||||| |||| ||||||| ||||||||||||  ||||| |||||   ||||||||||||||||||||||||||     
T  50815438 tgctaactatatcatccggaattcaagagtactaagcaccatgataattcagagtgcagaatccgtagagacaaatacaaagcaccaaatgttcatggag 50815537  T
Q  300 tt---atctttgtgcccaaaggtttcag---ccacatgccaacttttatttatttgaa 351  Q
    ||   |||||||||||||| | ||||||   ||||||| |||||||||||||||||||    
T  50815538 ttgtcatctttgtgcccaaggatttcagccaccacatgtcaacttttatttatttgaa 50815595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 100 - 351
Target Start/End: Complemental strand, 50860526 - 50860269
Alignment:
Q  100 aagattgggaggatccaactattgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaatt 199  Q
    ||||||||||||| ||||| ||||||||||||||||| ||||||||||| | ||||||||| |||  ||||||||| ||||| || ||||||||||||||    
T  50860526 aagattgggaggacccaacaattgttccagaatgccttttatctcatcttacaacatgctcccttcgaaattatagtcgcatcaattgtgagtttcaatt 50860427  T
Q  200 ttctaaatatataatgcagaattcaagagtattaaggaccatgacaattcagagtgccaaatccttagagtgcaatacaaagcaccaaatgttcatggaa 299  Q
    | |||| ||||| || | ||||||||||||| |||| ||||||| ||||||||||||  ||||| |||||   ||||||||||||||||||||||||||     
T  50860426 tgctaactatatcatccggaattcaagagtactaagcaccatgataattcagagtgcagaatccgtagagacaaatacaaagcaccaaatgttcatggag 50860327  T
Q  300 tt---atctttgtgcccaaaggtttcag---ccacatgccaacttttatttatttgaa 351  Q
    ||   |||||||||||||| | ||||||   ||||||| |||||||||||||||||||    
T  50860326 ttgtcatctttgtgcccaaggatttcagccaccacatgtcaacttttatttatttgaa 50860269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 120 - 379
Target Start/End: Complemental strand, 49856714 - 49856455
Alignment:
Q  120 attgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaattttctaaatatataatgcaga 219  Q
    ||||| ||||||||||| ||||||||||| | ||||||||| |||| || |||||||||||| || || ||| |||||||| | |||||||| |||||||    
T  49856714 attgtaccagaatgccttttatctcatcttacaacatgctcacttagaagttatagccgcataaattgcgagcttcaatttgcaaaatatatcatgcaga 49856615  T
Q  220 attcaagagtattaaggaccatgacaattcagagtgccaaatccttagagtgcaatacaaagcaccaaatgttcatggaattatctttgtgcccaaaggt 319  Q
    ||||||||||| |||| | ||||| |||||||||||||||||   | ||    |||||||||  ||||||||   |||||||||||| || ||||| |      
T  49856614 attcaagagtactaagcatcatgaaaattcagagtgccaaatttctggatacaaatacaaagatccaaatgtcattggaattatcttcgttcccaatgaa 49856515  T
Q  320 ttcagccacatgccaacttttatttatttgaatcacaatgggtagagcatgcgtgcaata 379  Q
    |||| ||||||| | |||| ||||||||||||| | ||||  ||||||||||||||||||    
T  49856514 ttcaaccacatgtccacttctatttatttgaatgataatgtatagagcatgcgtgcaata 49856455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 190 - 311
Target Start/End: Complemental strand, 49971770 - 49971649
Alignment:
Q  190 agtttcaattttctaaatatataatgcagaattcaagagtattaaggaccatgacaattcagagtgccaaatccttagagtgca-atacaaagcaccaaa 288  Q
    ||||||||||| | ||||||||||||||||||||||||| |||||| || |||||||||||| ||||||||| | |||| | || || |||| |||||||    
T  49971770 agtttcaatttgcaaaatatataatgcagaattcaagagcattaagcacaatgacaattcagtgtgccaaatacctaga-tacagatgcaaaacaccaaa 49971672  T
Q  289 tgttcatggaattatctttgtgc 311  Q
    |||||||||||||||||||||||    
T  49971671 tgttcatggaattatctttgtgc 49971649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 193 - 328
Target Start/End: Complemental strand, 49979391 - 49979261
Alignment:
Q  193 ttcaattttctaaatatataatgcagaattcaagagtattaaggaccatgacaattcagagtgccaaatccttagagtgcaatacaaagcaccaaatgtt 292  Q
    |||||||| |||| ||||| ||||| |||| ||||||| |||| ||||||||||||||| ||||||||||| |||||   |||||||   ||||||||||    
T  49979391 ttcaatttgctaactatatcatgcataattgaagagtactaagaaccatgacaattcagggtgccaaatccgtagagacaaatacaa---accaaatgtt 49979295  T
Q  293 catggaattatctttgtgcccaaaggtttcagccac 328  Q
    ||||||||||||  ||||||||||||||||||||||    
T  49979294 catggaattatc--tgtgcccaaaggtttcagccac 49979261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 121 - 246
Target Start/End: Complemental strand, 49868099 - 49867974
Alignment:
Q  121 ttgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaattttctaaatatataatgcagaa 220  Q
    |||||||||||||||| | ||||||||| | ||| ||||| |||| |||||| |||||||| || |||||||||| |||| | |||||||||||||||||    
T  49868099 ttgttccagaatgcctttcatctcatcttacaacttgctcacttagaaattacagccgcataaattgtgagtttccatttgcaaaatatataatgcagaa 49868000  T
Q  221 ttcaagagtattaaggaccatgacaa 246  Q
    |||| ||||| | |||||||||||||    
T  49867999 ttcaggagtactgaggaccatgacaa 49867974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 94 - 350
Target Start/End: Complemental strand, 49973195 - 49972939
Alignment:
Q  94 atgacgaagattgggaggatccaactattgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtt 193  Q
    ||||| ||||||||||||| | |   ||||||||| ||||||| |||||  ||||   ||||||||| |||| ||||||| |  |||| |  |||||| |    
T  49973195 atgacaaagattgggaggaacaagaaattgttccaaaatgccttttatcctatctatcaacatgctcacttagaaattattggggcatcacttgtgagct 49973096  T
Q  194 tcaattttctaaatatataatgcagaattcaagagtattaaggaccatgacaattcagagtgccaaatccttagagtgcaa-tacaaagcaccaaatgtt 292  Q
    ||| ||| | |||||||| ||| |||||||||||||| | ||  |||||| ||||||||||||||||| | |||| | ||| |||||||| |||||||      
T  49973095 tcactttgcaaaatatattatgaagaattcaagagtacttagcgccatgaaaattcagagtgccaaattcctaga-tacaactacaaagctccaaatgaa 49972997  T
Q  293 catggaattatctttgtgcccaaaggtttcagccacatgccaacttttatttatttga 350  Q
     | ||||||||||||||||| ||||  |||| |||||||  |||||||||||||||||    
T  49972996 aaaggaattatctttgtgcctaaagaattcaaccacatgtaaacttttatttatttga 49972939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 273 - 380
Target Start/End: Complemental strand, 49867974 - 49867865
Alignment:
Q  273 aatacaaagcaccaaatgttcatggaattatctttgtgcccaaaggtttcagccacatgccaacttt--tatttatttgaatcacaatgggtagagcatg 370  Q
    |||| ||||| |||||||||||||||||||||| | ||||||| |  ||||||||||||  ||||||  ||||||||||||| | ||||| |||||||||    
T  49867974 aatataaagctccaaatgttcatggaattatctgtatgcccaaggaattcagccacatgtaaacttttctatttatttgaatgataatggatagagcatg 49867875  T
Q  371 cgtgcaatag 380  Q
    || |||||||    
T  49867874 cgggcaatag 49867865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 420
Target Start/End: Original strand, 50815602 - 50815653
Alignment:
Q  369 tgcgtgcaatagcagcatccttaagcttatcaccaatatatttgagactcta 420  Q
    ||||||||||||||||| |||||||||| ||||||||| || ||||||||||    
T  50815602 tgcgtgcaatagcagcagccttaagcttgtcaccaataaatctgagactcta 50815653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 420
Target Start/End: Complemental strand, 50860262 - 50860211
Alignment:
Q  369 tgcgtgcaatagcagcatccttaagcttatcaccaatatatttgagactcta 420  Q
    ||||||||||||||||| |||||||||| ||||||||| || ||||||||||    
T  50860262 tgcgtgcaatagcagcagccttaagcttgtcaccaataaatctgagactcta 50860211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 121 - 383
Target Start/End: Complemental strand, 2230 - 1968
Alignment:
Q  121 ttgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaattttctaaatatataatgcagaa 220  Q
    ||||||||  ||| || ||||||||||| | ||||||||| |||| |||||| || ||||| || |||||| ||| |||| | | |||||| ||||||||    
T  2230 ttgttccaagatgtcttttatctcatcttacaacatgctcacttagaaattacagtcgcataaattgtgagcttccatttgcaagatatatcatgcagaa 2131  T
Q  221 ttcaagagtattaaggaccatgacaattcagagtgccaaatccttagagtgcaatacaaagcaccaaatgttcatggaattatctttgtgcccaaaggtt 320  Q
    ||||||| ||||| | ||||||||||||||||||||| ||| ||||||    |||||||||| |||||||||||||||||||| ||||||||||| |  |    
T  2130 ttcaagaatattacgcaccatgacaattcagagtgccgaattcttagatacaaatacaaagctccaaatgttcatggaattatatttgtgcccaaggaat 2031  T
Q  321 tcagccacatgccaacttttatttatttgaatcacaatgggtagagcatgcgtgcaatagcag 383  Q
    |||  |||||| |||||||||||||||||||| | ||||| || |||| | ||||||||||||    
T  2030 tcaatcacatgtcaacttttatttatttgaatgataatggatacagcaagagtgcaatagcag 1968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 2408 - 2380
Alignment:
Q  31 atttccccaaacttcaaactcttatcatt 59  Q
    |||||||||||||||||||||||||||||    
T  2408 atttccccaaacttcaaactcttatcatt 2380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 121 - 383
Target Start/End: Complemental strand, 3776 - 3514
Alignment:
Q  121 ttgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaattttctaaatatataatgcagaa 220  Q
    ||||||||  ||| || ||||||||||| | ||||||||| |||| |||||| || ||||| || |||||| ||| |||| | | |||||| ||||||||    
T  3776 ttgttccaagatgtcttttatctcatcttacaacatgctcacttagaaattacagtcgcataaattgtgagcttccatttgcaagatatatcatgcagaa 3677  T
Q  221 ttcaagagtattaaggaccatgacaattcagagtgccaaatccttagagtgcaatacaaagcaccaaatgttcatggaattatctttgtgcccaaaggtt 320  Q
    ||||||| ||||| | ||||||||||||||||||||| ||| ||||||    |||||||||| |||||||||||||||||||| ||||||||||| |  |    
T  3676 ttcaagaatattacgcaccatgacaattcagagtgccgaattcttagatacaaatacaaagctccaaatgttcatggaattatatttgtgcccaaggaat 3577  T
Q  321 tcagccacatgccaacttttatttatttgaatcacaatgggtagagcatgcgtgcaatagcag 383  Q
    |||  |||||| |||||||||||||||||||| | ||||| || |||| | ||||||||||||    
T  3576 tcaatcacatgtcaacttttatttatttgaatgataatggatacagcaagagtgcaatagcag 3514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 3954 - 3926
Alignment:
Q  31 atttccccaaacttcaaactcttatcatt 59  Q
    |||||||||||||||||||||||||||||    
T  3954 atttccccaaacttcaaactcttatcatt 3926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 126 - 401
Target Start/End: Complemental strand, 19370044 - 19369773
Alignment:
Q  126 ccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaattttctaaatatataatgcagaattcaa 225  Q
    |||| |||||| ||||||||||||| ||||||||| |||| ||||||  ||||| | ||||||||| |||||||| | ||||||||  || |||| ||||    
T  19370044 ccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcctaaactgtgagattcaatttgcaaaatatatcttgaagaactcaa 19369945  T
Q  226 gagtattaaggaccatgacaattcagagtgccaaatccttagagtgcaatacaaagcaccaaatgttcatggaattatctttgtgcccaaaggtttcagc 325  Q
     |||| |||  |||||||||||||||| |||| ||||  ||||    |||||||| | ||||| | ||| |||||||||| | |||| || |  |||  |    
T  19369944 cagtactaaacaccatgacaattcagattgccgaatcagtagatacaaatacaaaactccaaacgatcaaggaattatctctctgccaaaggaattccac 19369845  T
Q  326 cacatgccaacttttatttatttgaatcacaatgggtagagcatgcgtgcaatagcagcatccttaagcttatcac 401  Q
    | |||| |||||||||||||||||||| | ||||| ||||    |||||||||||||||| |||||||||| ||||    
T  19369844 cgcatgtcaacttttatttatttgaatgataatggataga----gcgtgcaatagcagcagccttaagcttgtcac 19369773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 19929351 - 19929412
Alignment:
Q  186 tgtgagtttcaattttctaaatatataatgcagaattcaagagtattaaggaccatgacaat 247  Q
    |||||| |||||||| | |||||||| ||||||||||||| |||||| | ||||||| ||||    
T  19929351 tgtgagcttcaatttgcaaaatatattatgcagaattcaaaagtattgaagaccatgtcaat 19929412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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