View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11954_low_1 (Length: 969)
Name: NF11954_low_1
Description: NF11954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11954_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 599; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 20 - 722
Target Start/End: Original strand, 49978315 - 49979042
Alignment:
| Q |
20 |
caaagcacttccgcaatctcatgtgagtggttgttcaattgaggttggatgatcctaatttaaacttgatattactatcatagttataaaattaaaatta |
119 |
Q |
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| T |
49978315 |
caaagcacttccgcaatctcatgtgagtggttgttcaattgaggttggatgatcctaatttaaacttgatattactatcatagttataaaattaaaatta |
49978414 |
T |
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| Q |
120 |
aatctgattttactaggacatcacacggccaccaattaatgttgtgaatgcataacggggtggaatcctatttccaaattataaacttcttttgctctca |
219 |
Q |
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| T |
49978415 |
aatctgattttactaggacatcacacggccaccaat----gttgtgaatgcataacggggtggaatcctatttccaaattataaacttcttttcctc--a |
49978508 |
T |
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| Q |
220 |
catgtt--------------gttgtttttccattagaataatacagtta-----------------tacaaaatatacagtgtttgatttgatagaattt |
288 |
Q |
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| T |
49978509 |
catgtttttttgaaagacttgttgtttttccattagaataatacagttagcaatagcatgcatatatacaaaatatacagtgtttgatttgatagaattt |
49978608 |
T |
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| Q |
289 |
gtgaaattgatattcagatgttatccaccaatagcaacagcagggtatcatccagcaggtaacataggagatcatcatcatcacccaacaatgccattga |
388 |
Q |
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| T |
49978609 |
gtgaaattgatattcagatgttatccaccaatagcaacagcagggtatcatccagcaggtaacataggagatcatcatcatcacccaacaatgccattga |
49978708 |
T |
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| Q |
389 |
gtttcccaacatccttctctgctgcaggttcatcatcctcaacatctcaagttcaacaatatctgtactcttcaccatcaaggcctatgtctttccctcc |
488 |
Q |
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| T |
49978709 |
gtttcccaacatccttctctgctgcaggttcatcatcctcaacatctcaagttcaacaatatctgtactcttcaccatcaaggcctatgtctttccctcc |
49978808 |
T |
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| Q |
489 |
acatttggttcctcacgattaccgtcatgtgagtcatatgatgagtaacaatgggcagcaatatgtggcaggtggaggtgagtcaagttacacgtgcata |
588 |
Q |
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| T |
49978809 |
acatttggttcctcacgattaccgtcatgtgagtcatatgatgagtaacaatgggcagcaatatgtggcaggtggaggtgagtcaagttacacgtgcata |
49978908 |
T |
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| Q |
589 |
ggtgcaccggttggacaaggttttccagatcatcatccttcaacgatcaatcgatttcaagatggtatgtaatggagtgatattttgttatcataaagac |
688 |
Q |
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| T |
49978909 |
ggtgcaccggttggacaaggttttccagatcatcatccttcaacgatcaatcgatttcaagatggtatgtaatggagtgatattttgttatcataaagac |
49979008 |
T |
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| Q |
689 |
acgctagctatctgtaatgtatgtatgtatatcc |
722 |
Q |
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| T |
49979009 |
acgctagctatctgtaatgtatgtatgtatatcc |
49979042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 736 - 953
Target Start/End: Original strand, 49979068 - 49979284
Alignment:
| Q |
736 |
tagatgattcataattaattaaggtgctgacagatagctagggttatgactcatcatgagtaagaaagaagagatagcaacaacagtaactaggtgctgc |
835 |
Q |
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| T |
49979068 |
tagatgattcataattaattaaggtgctgacagatagctagggttatgactcatcatgagtaagaaagaagagatagcaacaacagtaactaggtgctgc |
49979167 |
T |
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| Q |
836 |
agcttttgagatcattcacaacctcagctactttggattctagctgtgggaatgtcttttatatgttggttcggtacaacaacaaacaagctgttggata |
935 |
Q |
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| T |
49979168 |
agcttttgagctcattcacaacctcagctactttggattctagctgt-ggaatgtcttttatatgttggttcggtacaacaacaaacaagctgttggata |
49979266 |
T |
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| Q |
936 |
tgaactgaaagtttgtgt |
953 |
Q |
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| T |
49979267 |
tgaactgaaagtttgtgt |
49979284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 556 - 612
Target Start/End: Complemental strand, 49952178 - 49952122
Alignment:
| Q |
556 |
gcaggtggaggtgagtcaagttacacgtgcataggtgcaccggttggacaaggtttt |
612 |
Q |
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| T |
49952178 |
gcaggtggtggtgagtcaagttacacttgcataggtgcaccggttagacaaggtttt |
49952122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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