View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11954_low_11 (Length: 362)
Name: NF11954_low_11
Description: NF11954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11954_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 353
Target Start/End: Original strand, 9500571 - 9500905
Alignment:
| Q |
19 |
tattgctctctgcttgggtggagattaaaccaatctccacccttcagctaaagtgaaacttgactaggttctagggtgtatggaagaccatagttgaatt |
118 |
Q |
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| T |
9500571 |
tattgctctctgcttgggtggagattaaaccaatctccacccttcagctaaagtgaaacttgactaggttctagggtgtatggaagaccatagttgaatt |
9500670 |
T |
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| Q |
119 |
ttctgttctccaacctatttgctacattgataaatactgtgtttggatgtatcactggcttgtcaattttattgcttgacaattaaaatatgattctact |
218 |
Q |
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| T |
9500671 |
ttctgttctccaacctatttgctacaatgataaatactatgtttggaagtatcactggcttgtcaattttattgcttgacaattaaaatatgattctact |
9500770 |
T |
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| Q |
219 |
tcccataggttaaggagttgactgaacaatttcctgctgctactcctcttgctttggtgctaaaacagtttttagcagaccggagccttgaccagtccta |
318 |
Q |
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| T |
9500771 |
tcccataggttaaggagttgactgaacaatttcctgctgctactcctcttgctttggtgctaaaacagtttttagcagaccggagccttgaccagtccta |
9500870 |
T |
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| Q |
319 |
ctctggtggattaagttcctactgtttggtatgca |
353 |
Q |
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| T |
9500871 |
ctctggtggattaagttcctactgtttggtatgca |
9500905 |
T |
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