View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11954_low_14 (Length: 303)
Name: NF11954_low_14
Description: NF11954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11954_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 39370414 - 39370687
Alignment:
| Q |
19 |
atttagtagatggttaatgagttgcaacgctttgttattttcattaaccatccactgtacataattaactatatatttgagataagctaaccatctaaag |
118 |
Q |
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| T |
39370414 |
atttagtagatggttaatgagttgcaacgctttgttatattcattaaccatccactgtacataattaccaatatatttgagatgcgctaaccatctaaag |
39370513 |
T |
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| Q |
119 |
tgttgtcaaattttcgtgtcaaaatttcaaaattattgcttttgcttatatcctaactgagtatgaacttgaaatcctcagggtggtttcgatccgaatg |
218 |
Q |
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| T |
39370514 |
tgttgtcaaattttcgtgtcaaaatttcaaaattattgcttttgcttatatcctaactgagtatgaacttgaaatcctcagggtggtttcgatccgaatg |
39370613 |
T |
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| Q |
219 |
ctgtagctacagcaaacatccttgaaacttcaacacctgtgattgatgggaaaaagtactatgttttgtctgtg |
292 |
Q |
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| T |
39370614 |
ctgtagctacagcaaacatccttgaaacttcaacgcctgtgattgatgggaaaaagtactatgttttgtctgtg |
39370687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 282283 - 282356
Alignment:
| Q |
23 |
agtagatggttaatgagttgcaacgctttgttattttcattaaccatccactgtacataattaactatatattt |
96 |
Q |
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| T |
282283 |
agtagatatttaataagttgcaacaccttgttatttttattaaccatccactaaacataactaaccatatattt |
282356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 4364327 - 4364249
Alignment:
| Q |
50 |
ttgttattttcattaaccatccactgtacataattaactatatatttgagataagctaaccatctaaagtgttgtcaaa |
128 |
Q |
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| T |
4364327 |
ttgttattttcattaaccgatcactgaacataattaactacatatttgaattgcgttaactatctaaattgttgtcaaa |
4364249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 15367849 - 15367789
Alignment:
| Q |
29 |
tggttaatgagttgcaacgctttgttattttcattaaccatccactgtacataattaacta |
89 |
Q |
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| T |
15367849 |
tggttaatgagttgcgacactttgttatgtacatcaaccatctactaaacataattaacta |
15367789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 52910143 - 52910183
Alignment:
| Q |
58 |
ttcattaaccatccactgtacataattaactatatatttga |
98 |
Q |
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| T |
52910143 |
ttcattaaccatccactggacataattaaccgtatatttga |
52910183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 29246426 - 29246472
Alignment:
| Q |
28 |
atggttaatgagttgcaacgctttgttattttcattaaccatccact |
74 |
Q |
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| T |
29246426 |
atggttaatgagttgcgacaccttgttatattcattaaccatccact |
29246472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 17105454 - 17105548
Alignment:
| Q |
182 |
tgaacttgaaatcctcagggtggtttcgatccgaatgctgtagctacagcaaacatccttgaaacttcaacacctgtgattgatgggaaaaagta |
276 |
Q |
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| T |
17105454 |
tgaacttgaattcctcagggtggttttgatacaaatgccgtagctgtggcaaacatcttagagagttcagcaccagtgattggtgggaaacagta |
17105548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 21143781 - 21143713
Alignment:
| Q |
27 |
gatggttaatgagttgcaacgctttgttattttcattaaccatccactgtacataattaactatatatt |
95 |
Q |
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|||| ||||||||||| || ||||||||| ||||||||||||||||| || ||| |||| ||||||| |
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| T |
21143781 |
gatgattaatgagttgtgacactttgttatattcattaaccatccacttaacgtaactaaccatatatt |
21143713 |
T |
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