View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11954_low_15 (Length: 266)
Name: NF11954_low_15
Description: NF11954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11954_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 39559477 - 39559218
Alignment:
| Q |
1 |
tgttccatcagccagttccacttgaacgaggcgagttcgcagaagtctaatataagctccagatgggttaaattgtgaaacatgccatgtaaataacagg |
100 |
Q |
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| T |
39559477 |
tgttccatcagccagttccacttgaacgaggcgagttcgcagaagtctaatataagctccagatgggttaaattgtgaaacatgccatgtaaataacagg |
39559378 |
T |
|
| Q |
101 |
gggaggtctctcgtatgcggagatggctcacgttataaagccaatcaaactcgatggaacctttggaaatgttagctctgaccagattggataggtttag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39559377 |
gggaggtctctcgtatgcggagatggctcacgttataaagccaatcaaactcgatggaacctttggaaatgttagctctgaccaaattggataggtttag |
39559278 |
T |
|
| Q |
201 |
aacctctctacctgtacgaatcaccttacaaagtgccgtaaggattacatcctttgcttc |
260 |
Q |
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|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39559277 |
aacctctctagctgtacgaataaccttacaaagtgccgtaaggattacatcctttgcttc |
39559218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 108 - 260
Target Start/End: Complemental strand, 50814979 - 50814827
Alignment:
| Q |
108 |
ctctcgtatgcggagatggctcacgttataaagccaatcaaactcgatggaacctttggaaatgttagctctgaccagattggataggtttagaacctct |
207 |
Q |
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|||| ||||||||||| | ||||||||||||||||||||||||| | |||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
50814979 |
ctcttgtatgcggagaagattcacgttataaagccaatcaaactcaagtaaaccattggaaatgttagctctgaccaaattggataggtttagaacctct |
50814880 |
T |
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| Q |
208 |
ctacctgtacgaatcaccttacaaagtgccgtaaggattacatcctttgcttc |
260 |
Q |
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| T |
50814879 |
ctacctgtacgaatcaccatacaacgtctcgtaactattacatcctttgcttc |
50814827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 108 - 260
Target Start/End: Original strand, 50860885 - 50861037
Alignment:
| Q |
108 |
ctctcgtatgcggagatggctcacgttataaagccaatcaaactcgatggaacctttggaaatgttagctctgaccagattggataggtttagaacctct |
207 |
Q |
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|||| ||||||||||| | ||||||||||||||||||||||||| | |||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
50860885 |
ctcttgtatgcggagaagattcacgttataaagccaatcaaactcaagtaaaccattggaaatgttagctctgaccaaattggataggtttagaacctct |
50860984 |
T |
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| Q |
208 |
ctacctgtacgaatcaccttacaaagtgccgtaaggattacatcctttgcttc |
260 |
Q |
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|||||||||||||||||| ||||| || ||||| ||||||||||||||||| |
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| T |
50860985 |
ctacctgtacgaatcaccatacaacgtctcgtaactattacatcctttgcttc |
50861037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 49856951 - 49856999
Alignment:
| Q |
43 |
aagtctaatataagctccagatgggttaaattgtgaaacatgccatgta |
91 |
Q |
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||||| ||| |||||||||| ||||||||||||||||||| || ||||| |
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| T |
49856951 |
aagtccaatctaagctccaggtgggttaaattgtgaaacacgctatgta |
49856999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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