View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11954_low_18 (Length: 249)
Name: NF11954_low_18
Description: NF11954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11954_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 33863822 - 33863601
Alignment:
| Q |
19 |
cccttgccctgtcaacatccctccttaaccccatccttgattgtttctttctaacctacctcaataataagtatcatgtcctcttagccacatattctta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33863822 |
cccttgccctgtcaacatccctccttaaccccatccttgattgtttctttctaacctacctcaataataagtatcatgtcctcttagccacatattctaa |
33863723 |
T |
|
| Q |
119 |
gaactattcccagatggacttgtccaaataaaaacatacccttttcgtcttttagacttcatgtagtctttatcacataagaatacaagaagccaatttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33863722 |
gaactattcccagatggacttgtccaaataaaaacatacccttttcgtcttttagacttcatgtagtctttatcacataagaatacaagaagccaatttt |
33863623 |
T |
|
| Q |
219 |
cagtgtagggaaatccctttgc |
240 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
33863622 |
cagtgtagggaaatccctttgc |
33863601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 33917100 - 33917321
Alignment:
| Q |
19 |
cccttgccctgtcaacatccctccttaaccccatccttgattgtttctttctaacctacctcaataataagtatcatgtcctcttagccacatattctta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33917100 |
cccttgccctgtcaacatccctccttaaccccatccttgattgtttctttctaacctacctcaataataagtatcatgtcctcttagccacatattctaa |
33917199 |
T |
|
| Q |
119 |
gaactattcccagatggacttgtccaaataaaaacatacccttttcgtcttttagacttcatgtagtctttatcacataagaatacaagaagccaatttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33917200 |
gaactattcccagatggacttgtccaaataaaaacatacccttttcgtcttttagacttcatgtagtctttatcacataagaatacaagaagccaatttt |
33917299 |
T |
|
| Q |
219 |
cagtgtagggaaatccctttgc |
240 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
33917300 |
cagtgtagggaaatccctttgc |
33917321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University